7KCR image
Deposition Date 2020-10-07
Release Date 2020-12-16
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7KCR
Title:
Cryo-EM structure of Zika virus in complex with E protein cross-linking human monoclonal antibody ADI30056
Biological Source:
Method Details:
Experimental Method:
Resolution:
4.00 Å
Aggregation State:
2D ARRAY
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:envelope protein E
Chain IDs:C (auth: A), E (auth: C), G (auth: E)
Chain Length:501
Number of Molecules:3
Biological Source:Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:membrane protein M
Chain IDs:D (auth: B), F (auth: D), H (auth: F)
Chain Length:75
Number of Molecules:3
Biological Source:Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
Polymer Type:polypeptide(L)
Molecule:ADI30056 Fab heavy chain variable region
Chain IDs:A (auth: H)
Chain Length:121
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:ADI30056 Fab light chain variable region
Chain IDs:B (auth: L)
Chain Length:107
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural Basis of Zika Virus Specific Neutralization in Subsequent Flavivirus Infections.
Viruses 12 ? ? (2020)
PMID: 33255202 DOI: 10.3390/v12121346

Abstact

Zika virus (ZIKV), a mosquito-borne human flavivirus that causes microcephaly and other neurological disorders, has been a recent focus for the development of flavivirus vaccines and therapeutics. We report here a 4.0 Å resolution structure of the mature ZIKV in complex with ADI-30056, a ZIKV-specific human monoclonal antibody (hMAb) isolated from a ZIKV infected donor with a prior dengue virus infection. The structure shows that the hMAb interactions span across the E protein dimers on the virus surface, inhibiting conformational changes required for the formation of infectious fusogenic trimers similar to the hMAb, ZIKV-117. Structure-based functional analysis, and structure and sequence comparisons, identified ZIKV residues essential for neutralization and crucial for the evolution of highly potent E protein crosslinking Abs in ZIKV. Thus, this epitope, ZIKV's "Achilles heel", defined by the contacts between ZIKV and ADI-30056, could be a suitable target for the design of therapeutic antibodies.

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Primary Citation of related structures