7K9H image
Entry Detail
PDB ID:
7K9H
EMDB ID:
Title:
SARS-CoV-2 Spike in complex with neutralizing Fab 2B04 (one up, two down conformation)
Biological Source:
PDB Version:
Deposition Date:
2020-09-29
Release Date:
2021-09-29
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Mutations:R685A, R686*, A687*, R688*, K989P, V990P
Chain IDs:A, B, C
Chain Length:1256
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:2B04 heavy chain
Chain IDs:D (auth: H), E (auth: I)
Chain Length:119
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:2B04 light chain
Chain IDs:F (auth: L), G (auth: M)
Chain Length:109
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural mechanism of SARS-CoV-2 neutralization by two murine antibodies targeting the RBD.
Cell Rep 37 109881 109881 (2021)
PMID: 34655519 DOI: 10.1016/j.celrep.2021.109881

Abstact

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has necessitated the rapid development of antibody-based therapies and vaccines as countermeasures. Here, we use cryoelectron microscopy (cryo-EM) to characterize two protective anti-SARS-CoV-2 murine monoclonal antibodies (mAbs) in complex with the spike protein, revealing similarities between epitopes targeted by human and murine B cells. The more neutralizing mAb, 2B04, binds the receptor-binding motif (RBM) of the receptor-binding domain (RBD) and competes with angiotensin-converting enzyme 2 (ACE2). By contrast, 2H04 binds adjacent to the RBM and does not compete for ACE2 binding. Naturally occurring sequence variants of SARS-CoV-2 and corresponding neutralization escape variants selected in vitro map to our structurally defined epitopes, suggesting that SARS-CoV-2 might evade therapeutic antibodies with a limited set of mutations, underscoring the importance of combination mAb therapeutics. Finally, we show that 2B04 neutralizes SARS-CoV-2 infection by preventing ACE2 engagement, whereas 2H04 reduces host cell attachment without directly disrupting ACE2-RBM interactions, providing distinct inhibitory mechanisms used by RBD-specific mAbs.

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Primary Citation of related structures