7K93 image
Deposition Date 2020-09-28
Release Date 2020-12-23
Last Version Date 2024-11-20
Entry Detail
PDB ID:
7K93
Keywords:
Title:
DENV2 NS1 in complex with neutralizing 2B7 single chain Fab variable region (scFv)
Biological Source:
Source Organism:
Dengue virus 2 (Taxon ID: 11060)
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
2.89 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Non-structural protein 1
Chain IDs:A, B, C, D
Chain Length:376
Number of Molecules:4
Biological Source:Dengue virus 2
Polymer Type:polypeptide(L)
Molecule:2B7 single chain fab variable region
Chain IDs:E, F (auth: G), G (auth: I), H (auth: K)
Chain Length:251
Number of Molecules:4
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural basis for antibody inhibition of flavivirus NS1-triggered endothelial dysfunction.
Science 371 194 200 (2021)
PMID: 33414220 DOI: 10.1126/science.abc0476

Abstact

Medically important flaviviruses cause diverse disease pathologies and collectively are responsible for a major global disease burden. A contributing factor to pathogenesis is secreted flavivirus nonstructural protein 1 (NS1). Despite demonstrated protection by NS1-specific antibodies against lethal flavivirus challenge, the structural and mechanistic basis remains unknown. Here, we present three crystal structures of full-length dengue virus NS1 complexed with a flavivirus-cross-reactive, NS1-specific monoclonal antibody, 2B7, at resolutions between 2.89 and 3.96 angstroms. These structures reveal a protective mechanism by which two domains of NS1 are antagonized simultaneously. The NS1 wing domain mediates cell binding, whereas the β-ladder triggers downstream events, both of which are required for dengue, Zika, and West Nile virus NS1-mediated endothelial dysfunction. These observations provide a mechanistic explanation for 2B7 protection against NS1-induced pathology and demonstrate the potential of one antibody to treat infections by multiple flaviviruses.

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Primary Citation of related structures