7K7H image
Entry Detail
PDB ID:
7K7H
EMDB ID:
Keywords:
Title:
Density-fitted Model Structure of Antibody Variable Domains of TyTx1 in Complex with PltB pentamer of Typhoid Toxin
Biological Source:
PDB Version:
Deposition Date:
2020-09-22
Release Date:
2021-09-01
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Pertussis like toxin subunit B
Chain IDs:A, B, C, D, E
Chain Length:114
Number of Molecules:5
Biological Source:Salmonella enterica subsp. enterica serovar Typhi str. CT18
Polymer Type:polypeptide(L)
Description:Pertussis toxin-like subunit ArtA
Chain IDs:H (auth: G)
Chain Length:14
Number of Molecules:1
Biological Source:Salmonella enterica subsp. enterica serovar Typhi str. CT18
Polymer Type:polypeptide(L)
Description:Fab Heavy Chain Variable Domain
Chain IDs:G (auth: H)
Chain Length:118
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Fab Light Chain Variable Domain
Chain IDs:F (auth: L)
Chain Length:114
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
The structural basis of Salmonella A 2 B 5 toxin neutralization by antibodies targeting the glycan-receptor binding subunits.
Cell Rep 36 109654 109654 (2021)
PMID: 34496256 DOI: 10.1016/j.celrep.2021.109654

Abstact

Many bacterial pathogens secrete A(2)B5 toxins comprising two functionally distinct yet complementary "A" and "B" subunits to benefit the pathogens during infection. The lectin-like pentameric B subunits recognize specific sets of host glycans to deliver the toxin into target host cells. Here, we offer the molecular mechanism by which neutralizing antibodies, which have the potential to bind to all glycan-receptor binding sites and thus completely inhibit toxin binding to host cells, are inhibited from exerting this action. Cryogenic electron microscopy (cryo-EM)-based analyses indicate that the skewed positioning of the toxin A subunit(s) toward one side of the toxin B pentamer inhibited neutralizing antibody binding to the laterally located epitopes, rendering some glycan-receptor binding sites that remained available for the toxin binding and endocytosis process, which is strikingly different from the counterpart antibodies recognizing the far side-located epitopes. These results highlight additional features of the toxin-antibody interactions and offer important insights into anti-toxin strategies.

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Primary Citation of related structures