7K7F image
Deposition Date 2020-09-22
Release Date 2021-03-10
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7K7F
Keywords:
Title:
Solution Structure of the Corynebacterium diphtheriae SpaA Pilin-Signal Peptide Complex
Biological Source:
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative surface-anchored fimbrial subunit
Gene (Uniprot):DIP2013
Chain IDs:A
Chain Length:143
Number of Molecules:1
Biological Source:Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SpaA sorting signal peptide
Chain IDs:B
Chain Length:10
Number of Molecules:1
Biological Source:Corynebacterium diphtheriae
Ligand Molecules
Primary Citation
Sortase-assembled pili in Corynebacterium diphtheriae are built using a latch mechanism.
Proc.Natl.Acad.Sci.USA 118 ? ? (2021)
PMID: 33723052 DOI: 10.1073/pnas.2019649118

Abstact

Gram-positive bacteria assemble pili (fimbriae) on their surfaces to adhere to host tissues and to promote polymicrobial interactions. These hair-like structures, although very thin (1 to 5 nm), exhibit impressive tensile strengths because their protein components (pilins) are covalently crosslinked together via lysine-isopeptide bonds by pilus-specific sortase enzymes. While atomic structures of isolated pilins have been determined, how they are joined together by sortases and how these interpilin crosslinks stabilize pilus structure are poorly understood. Using a reconstituted pilus assembly system and hybrid structural biology methods, we elucidated the solution structure and dynamics of the crosslinked interface that is repeated to build the prototypical SpaA pilus from Corynebacterium diphtheriae We show that sortase-catalyzed introduction of a K190-T494 isopeptide bond between adjacent SpaA pilins causes them to form a rigid interface in which the LPLTG sorting signal is inserted into a large binding groove. Cellular and quantitative kinetic measurements of the crosslinking reaction shed light onto the mechanism of pilus biogenesis. We propose that the pilus-specific sortase in C. diphtheriae uses a latch mechanism to select K190 on SpaA for crosslinking in which the sorting signal is partially transferred from the enzyme to a binding groove in SpaA in order to facilitate catalysis. This process is facilitated by a conserved loop in SpaA, which after crosslinking forms a stabilizing latch that covers the K190-T494 isopeptide bond. General features of the structure and sortase-catalyzed assembly mechanism of the SpaA pilus are likely conserved in Gram-positive bacteria.

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