7K7A image
Deposition Date 2020-09-22
Release Date 2020-09-30
Last Version Date 2024-05-15
Entry Detail
PDB ID:
7K7A
Keywords:
Title:
Transmembrane structure of TNFR1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
15
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tumor necrosis factor receptor superfamily member 1A
Gene (Uniprot):TNFRSF1A
Mutagens:C223A, M233A
Chain IDs:A, B, C
Chain Length:30
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The Diversity and Similarity of Transmembrane Trimerization of TNF Receptors.
Front Cell Dev Biol 8 569684 569684 (2020)
PMID: 33163490 DOI: 10.3389/fcell.2020.569684

Abstact

Receptors in the tumor necrosis factor receptor superfamily (TNFRSF) regulate proliferation of immune cells or induce programmed cell death, and many of them are candidates for antibody-based immunotherapy. Previous studies on several death receptors in the TNFRSF including Fas, p75NTR, and DR5 showed that the transmembrane helix (TMH) of these receptors can specifically oligomerize and their oligomeric states have direct consequences on receptor activation, suggesting a much more active role of TMH in receptor signaling than previously appreciated. Here, we report the structure of the TMH of TNFR1, another well studied member of the TNFRSF, in neutral bicelles that mimic a lipid bilayer. We find that TNFR1 TMH forms a defined trimeric complex in bicelles, and no evidences of higher-order clustering of trimers have been detected. Unexpectedly, a conserved proline, which is critical for Fas TMH trimerization, does not appear to play an important role in TNFR1 TMH trimerization, which is instead mediated by a glycine near the middle of the TMH. Further, TNFR1 TMH trimer shows a larger hydrophobic core than that of Fas or DR5, with four layers of hydrophobic interaction along the threefold axis. Comparison of the TNFR1 TMH structure with that of Fas and DR5 reveals reassuring similarities that have functional implications but also significant structural diversity that warrants systematic investigation of TMH oligomerization property for other members of the TNFRSF.

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Primary Citation of related structures