7K6P image
Deposition Date 2020-09-21
Release Date 2021-02-10
Last Version Date 2024-03-06
Entry Detail
PDB ID:
7K6P
Title:
Active state Dot1 bound to the unacetylated H4 nucleosome
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Mutations:K79M, G103A
Chain IDs:A, E
Chain Length:98
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:B, F
Chain Length:90
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1
Chain IDs:C, G
Chain Length:107
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Histone H2B 1.1
Mutations:K120C,S32T
Chain IDs:D, H
Chain Length:93
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (146-MER)
Chain IDs:I
Chain Length:146
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (146-MER)
Chain IDs:J
Chain Length:146
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Molecule:Histone-lysine N-methyltransferase, H3 lysine-79 specific
Gene (Uniprot):DOT1
Chain IDs:K
Chain Length:406
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Ubiquitin
Gene (Uniprot):UBC
Mutations:G76C
Chain IDs:L
Chain Length:76
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Regulation of the Dot1 histone H3K79 methyltransferase by histone H4K16 acetylation.
Science 371 ? ? (2021)
PMID: 33479126 DOI: 10.1126/science.abc6663

Abstact

Dot1 (disruptor of telomeric silencing-1), the histone H3 lysine 79 (H3K79) methyltransferase, is conserved throughout evolution, and its deregulation is found in human leukemias. Here, we provide evidence that acetylation of histone H4 allosterically stimulates yeast Dot1 in a manner distinct from but coordinating with histone H2B ubiquitination (H2BUb). We further demonstrate that this stimulatory effect is specific to acetylation of lysine 16 (H4K16ac), a modification central to chromatin structure. We provide a mechanism of this histone cross-talk and show that H4K16ac and H2BUb play crucial roles in H3K79 di- and trimethylation in vitro and in vivo. These data reveal mechanisms that control H3K79 methylation and demonstrate how H4K16ac, H3K79me, and H2BUb function together to regulate gene transcription and gene silencing to ensure optimal maintenance and propagation of an epigenetic state.

Legend

Protein

Chemical

Disease

Primary Citation of related structures