7K5B image
Deposition Date 2020-09-16
Release Date 2021-09-29
Last Version Date 2024-11-20
Entry Detail
PDB ID:
7K5B
Keywords:
Title:
Structure of outer-arm dynein bound to microtubule doublet in microtubule binding state 2 (MTBS-2)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.50 Å
Aggregation State:
FILAMENT
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Dynein heavy chain, outer arm protein
Gene (Uniprot):TTHERM_01276420
Chain IDs:A
Chain Length:4615
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Outer arm dynein beta heavy chain
Gene (Uniprot):TTHERM_00499300
Chain IDs:B
Chain Length:4588
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:gamma heavy chain
Chain IDs:C
Chain Length:3947
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein intermediate chain 2
Gene (Uniprot):TTHERM_00487150
Chain IDs:D
Chain Length:595
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Flagellar outer dynein arm intermediate protein, putative
Gene (Uniprot):TTHERM_00079230
Chain IDs:E
Chain Length:557
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein light chain roadblock-type 2 protein
Gene (Uniprot):TTHERM_00348650
Chain IDs:F
Chain Length:128
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein light chain roadblock-type 2 protein
Gene (Uniprot):TTHERM_00030210
Chain IDs:G
Chain Length:151
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein light chain
Chain IDs:H
Chain Length:91
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein light chain
Chain IDs:I
Chain Length:106
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein light chain
Gene (Uniprot):TTHERM_00023950
Chain IDs:J
Chain Length:95
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein light chain
Chain IDs:K
Chain Length:90
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein light chain
Gene (Uniprot):TTHERM_000442909
Chain IDs:L
Chain Length:111
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein light chain
Chain IDs:M
Chain Length:87
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein light chain tctex-type 1 protein
Gene (Uniprot):TTHERM_00392979
Chain IDs:N
Chain Length:114
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein light chain 2A
Chain IDs:O
Chain Length:120
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Thioredoxin
Gene (Uniprot):TTHERM_00149859
Chain IDs:P
Chain Length:112
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein light chain 1
Chain IDs:Q
Chain Length:192
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein light chain 4A
Chain IDs:R
Chain Length:150
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Primary Citation
Structures of outer-arm dynein array on microtubule doublet reveal a motor coordination mechanism.
Nat.Struct.Mol.Biol. 28 799 810 (2021)
PMID: 34556869 DOI: 10.1038/s41594-021-00656-9

Abstact

Thousands of outer-arm dyneins (OADs) are arrayed in the axoneme to drive a rhythmic ciliary beat. Coordination among multiple OADs is essential for generating mechanical forces to bend microtubule doublets (MTDs). Using electron microscopy, we determined high-resolution structures of Tetrahymena thermophila OAD arrays bound to MTDs in two different states. OAD preferentially binds to MTD protofilaments with a pattern resembling the native tracks for its distinct microtubule-binding domains. Upon MTD binding, free OADs are induced to adopt a stable parallel conformation, primed for array formation. Extensive tail-to-head (TTH) interactions between OADs are observed, which need to be broken for ATP turnover by the dynein motor. We propose that OADs in an array sequentially hydrolyze ATP to slide the MTDs. ATP hydrolysis in turn relaxes the TTH interfaces to effect free nucleotide cycles of downstream OADs. These findings lead to a model explaining how conformational changes in the axoneme produce coordinated action of dyneins.

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