7K53 image
Entry Detail
PDB ID:
7K53
EMDB ID:
Keywords:
Title:
Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS)
Biological Source:
PDB Version:
Deposition Date:
2020-09-16
Release Date:
2021-07-28
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Description:23S ribosomal RNA
Chain IDs:BB (auth: 1)
Chain Length:2903
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polyribonucleotide
Description:5S ribosomal RNA
Chain IDs:CB (auth: 2)
Chain Length:120
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polyribonucleotide
Description:16S ribosomal RNA
Chain IDs:AB (auth: 3)
Chain Length:1539
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polyribonucleotide
Description:mRNA
Chain IDs:FB (auth: 4)
Chain Length:18
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polyribonucleotide
Description:tRNAfMet
Chain IDs:DB (auth: 5), EB (auth: 6)
Chain Length:77
Number of Molecules:2
Biological Source:Escherichia coli (strain K12)
Polymer Type:polyribonucleotide
Description:tRNAPro
Chain IDs:GB (auth: 7)
Chain Length:77
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L31
Chain IDs:Z (auth: A)
Chain Length:223
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L32
Chain IDs:AA (auth: B)
Chain Length:56
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L33
Chain IDs:BA (auth: C)
Chain Length:50
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L34
Chain IDs:CA (auth: D)
Chain Length:201
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L35
Chain IDs:DA (auth: E)
Chain Length:177
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L36
Chain IDs:EA (auth: F)
Chain Length:176
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S2
Chain IDs:FA (auth: G)
Chain Length:225
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S3
Chain IDs:GA (auth: H)
Chain Length:131
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S4
Chain IDs:HA (auth: I)
Chain Length:141
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S5
Chain IDs:IA (auth: J)
Chain Length:157
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S6
Chain IDs:JA (auth: K)
Chain Length:100
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S7
Chain IDs:KA (auth: L)
Chain Length:143
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S8
Chain IDs:LA (auth: M)
Chain Length:129
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S9
Chain IDs:MA (auth: N)
Chain Length:127
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S10
Chain IDs:NA (auth: O)
Chain Length:98
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S11
Chain IDs:OA (auth: P)
Chain Length:116
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S12
Chain IDs:PA (auth: Q)
Chain Length:123
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S13
Chain IDs:QA (auth: R)
Chain Length:103
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S14
Chain IDs:RA (auth: S)
Chain Length:100
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S15
Chain IDs:SA (auth: T)
Chain Length:93
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S16
Chain IDs:TA (auth: U)
Chain Length:102
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S17
Chain IDs:UA (auth: V)
Chain Length:80
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S18
Chain IDs:VA (auth: W)
Chain Length:75
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S19
Chain IDs:WA (auth: X)
Chain Length:79
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S20
Chain IDs:XA (auth: Y)
Chain Length:85
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S21
Chain IDs:YA (auth: Z)
Chain Length:58
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L1
Chain IDs:ZA (auth: a)
Chain Length:223
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L2
Chain IDs:A (auth: b)
Chain Length:56
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L3
Chain IDs:B (auth: c)
Chain Length:50
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L4
Chain IDs:C (auth: d)
Chain Length:201
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L5
Chain IDs:D (auth: e)
Chain Length:177
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L6
Chain IDs:E (auth: f)
Chain Length:176
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L9
Chain IDs:F (auth: g)
Chain Length:225
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L10
Chain IDs:G (auth: h)
Chain Length:131
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L11
Chain IDs:H (auth: i)
Chain Length:141
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L13
Chain IDs:I (auth: j)
Chain Length:157
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L14
Chain IDs:J (auth: k)
Chain Length:100
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L15
Chain IDs:K (auth: l)
Chain Length:143
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L16
Chain IDs:L (auth: m)
Chain Length:129
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L17
Chain IDs:M (auth: n)
Chain Length:127
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L18
Chain IDs:N (auth: o)
Chain Length:98
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L19
Chain IDs:O (auth: p)
Chain Length:116
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L20
Chain IDs:P (auth: q)
Chain Length:123
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L21
Chain IDs:Q (auth: r)
Chain Length:103
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L22
Chain IDs:R (auth: s)
Chain Length:100
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L23
Chain IDs:S (auth: t)
Chain Length:93
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L24
Chain IDs:T (auth: u)
Chain Length:102
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L25
Chain IDs:U (auth: v)
Chain Length:80
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L27
Chain IDs:V (auth: w)
Chain Length:75
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L28
Chain IDs:W (auth: x)
Chain Length:79
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L29
Chain IDs:X (auth: y)
Chain Length:85
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L30
Chain IDs:Y (auth: z)
Chain Length:58
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Ligand Molecules
Primary Citation
Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation.
Nat Commun 12 4644 4644 (2021)
PMID: 34330903 DOI: 10.1038/s41467-021-24911-1

Abstact

Frameshifting of mRNA during translation provides a strategy to expand the coding repertoire of cells and viruses. How and where in the elongation cycle +1-frameshifting occurs remains poorly understood. We describe seven ~3.5-Å-resolution cryo-EM structures of 70S ribosome complexes, allowing visualization of elongation and translocation by the GTPase elongation factor G (EF-G). Four structures with a + 1-frameshifting-prone mRNA reveal that frameshifting takes place during translocation of tRNA and mRNA. Prior to EF-G binding, the pre-translocation complex features an in-frame tRNA-mRNA pairing in the A site. In the partially translocated structure with EF-G•GDPCP, the tRNA shifts to the +1-frame near the P site, rendering the freed mRNA base to bulge between the P and E sites and to stack on the 16S rRNA nucleotide G926. The ribosome remains frameshifted in the nearly post-translocation state. Our findings demonstrate that the ribosome and EF-G cooperate to induce +1 frameshifting during tRNA-mRNA translocation.

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Primary Citation of related structures