7K48 image
Entry Detail
PDB ID:
7K48
EMDB ID:
Title:
Structure of NavAb/Nav1.7-VS2A chimera trapped in the resting state by tarantula toxin m3-Huwentoxin-IV
Biological Source:
PDB Version:
Deposition Date:
2020-09-15
Release Date:
2020-12-02
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Maltose/maltodextrin-binding periplasmic protein,Ion transport protein,Sodium channel protein type 9 subunit alpha chimera
Mutations:R398A,L506A,M513V
Chain IDs:A, B, C, D
Chain Length:611
Number of Molecules:4
Biological Source:Escherichia coli (strain K12), Arcobacter butzleri (strain RM4018), Homo sapiens
Polymer Type:polypeptide(L)
Description:Mu-theraphotoxin-Hs2a
Mutations:E1G, E4G, Y33W
Chain IDs:E, F, G, H
Chain Length:35
Number of Molecules:4
Biological Source:Haplopelma schmidti
Ligand Molecules
Primary Citation
Structural Basis for High-Affinity Trapping of the Na V 1.7 Channel in Its Resting State by Tarantula Toxin.
Mol.Cell 81 38 48.e4 (2021)
PMID: 33232657 DOI: 10.1016/j.molcel.2020.10.039

Abstact

Voltage-gated sodium channels initiate electrical signals and are frequently targeted by deadly gating-modifier neurotoxins, including tarantula toxins, which trap the voltage sensor in its resting state. The structural basis for tarantula-toxin action remains elusive because of the difficulty of capturing the functionally relevant form of the toxin-channel complex. Here, we engineered the model sodium channel NaVAb with voltage-shifting mutations and the toxin-binding site of human NaV1.7, an attractive pain target. This mutant chimera enabled us to determine the cryoelectron microscopy (cryo-EM) structure of the channel functionally arrested by tarantula toxin. Our structure reveals a high-affinity resting-state-specific toxin-channel interaction between a key lysine residue that serves as a "stinger" and penetrates a triad of carboxyl groups in the S3-S4 linker of the voltage sensor. By unveiling this high-affinity binding mode, our studies establish a high-resolution channel-docking and resting-state locking mechanism for huwentoxin-IV and provide guidance for developing future resting-state-targeted analgesic drugs.

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