7K15 image
Deposition Date 2020-09-07
Release Date 2021-02-17
Last Version Date 2024-10-16
Entry Detail
PDB ID:
7K15
Title:
Crystal structure of the Human Leukotriene B4 Receptor 1 in Complex with Selective Antagonist MK-D-046
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.88 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Leukotriene B4 receptor 1,Flavodoxin,Leukotriene B4 receptor 1
Gene (Uniprot):DVU_2680, LTB4R
Chain IDs:A
Chain Length:490
Number of Molecules:1
Biological Source:Homo sapiens, Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
Primary Citation
Structural insights on ligand recognition at the human leukotriene B4 receptor 1.
Nat Commun 12 2971 2971 (2021)
PMID: 34016973 DOI: 10.1038/s41467-021-23149-1

Abstact

The leukotriene B4 receptor 1 (BLT1) regulates the recruitment and chemotaxis of different cell types and plays a role in the pathophysiology of infectious, allergic, metabolic, and tumorigenic human diseases. Here we present a crystal structure of human BLT1 (hBLT1) in complex with a selective antagonist MK-D-046, developed for the treatment of type 2 diabetes and other inflammatory conditions. Comprehensive analysis of the structure and structure-activity relationship data, reinforced by site-directed mutagenesis and docking studies, reveals molecular determinants of ligand binding and selectivity toward different BLT receptor subtypes and across species. The structure helps to identify a putative membrane-buried ligand access channel as well as potential receptor binding modes of endogenous agonists. These structural insights of hBLT1 enrich our understanding of its ligand recognition and open up future avenues in structure-based drug design.

Legend

Protein

Chemical

Disease

Primary Citation of related structures