7K12 image
Deposition Date 2020-09-07
Release Date 2021-01-13
Last Version Date 2023-10-18
Entry Detail
PDB ID:
7K12
Keywords:
Title:
ACMSD in complex with diflunisal
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.17 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:2-amino-3-carboxymuconate 6-semialdehyde decarboxylase
Gene (Uniprot):nbaD
Chain IDs:A, B
Chain Length:355
Number of Molecules:2
Biological Source:Pseudomonas fluorescens
Primary Citation
Diflunisal Derivatives as Modulators of ACMS Decarboxylase Targeting the Tryptophan-Kynurenine Pathway.
J.Med.Chem. 64 797 811 (2021)
PMID: 33369426 DOI: 10.1021/acs.jmedchem.0c01762

Abstact

In the kynurenine pathway for tryptophan degradation, an unstable metabolic intermediate, α-amino-β-carboxymuconate-ε-semialdehyde (ACMS), can nonenzymatically cyclize to form quinolinic acid, the precursor for de novo biosynthesis of nicotinamide adenine dinucleotide (NAD+). In a competing reaction, ACMS is decarboxylated by ACMS decarboxylase (ACMSD) for further metabolism and energy production. Therefore, the inhibition of ACMSD increases NAD+ levels. In this study, an Food and Drug Administration (FDA)-approved drug, diflunisal, was found to competitively inhibit ACMSD. The complex structure of ACMSD with diflunisal revealed a previously unknown ligand-binding mode and was consistent with the results of inhibition assays, as well as a structure-activity relationship (SAR) study. Moreover, two synthesized diflunisal derivatives showed half-maximal inhibitory concentration (IC50) values 1 order of magnitude better than diflunisal at 1.32 ± 0.07 μM (22) and 3.10 ± 0.11 μM (20), respectively. The results suggest that diflunisal derivatives have the potential to modulate NAD+ levels. The ligand-binding mode revealed here provides a new direction for developing inhibitors of ACMSD.

Legend

Protein

Chemical

Disease

Primary Citation of related structures