7JX5 image
Deposition Date 2020-08-26
Release Date 2021-07-21
Last Version Date 2023-11-15
Entry Detail
PDB ID:
7JX5
Keywords:
Title:
Crystal Structure of N-Phenylalanine Peptoid-modified Collagen Triple Helix
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.10 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Collagen mimetic peptide with N-Phenylalanine guest
Mutations:P11(NP9)
Chain IDs:A (auth: C), B (auth: A), C (auth: B), D (auth: E), E (auth: F), F (auth: D)
Chain Length:23
Number of Molecules:6
Biological Source:Homo sapiens
Primary Citation
Peptoid Residues Make Diverse, Hyperstable Collagen Triple-Helices
J.Am.Chem.Soc. 143 10910 10919 (2021)
PMID: 34255504 DOI: 10.1021/jacs.1c00708

Abstact

As the only ribosomally encoded N-substituted amino acid, proline promotes distinct secondary protein structures. The high proline content in collagen, the most abundant protein in the human body, is crucial to forming its hallmark structure: the triple-helix. For over five decades, proline has been considered compulsory for synthetic designs aimed at recapitulating collagen's structure and properties. Here we describe that N-substituted glycines (N-glys), also known as peptoid residues, exhibit a general triple-helical propensity similar to or greater than proline, enabling synthesis of stable triple-helical collagen mimetic peptides (CMPs) with unprecedented side chain diversity. Supported by atomic-resolution crystal structures as well as circular dichroism and computational characterizations spanning over 30 N-gly-containing CMPs, we discovered that N-glys stabilize the triple-helix primarily by sterically preorganizing individual chains into the polyproline-II helix. We demonstrated that N-glys with exotic side chains including a "click"-able alkyne and a photosensitive side chain enable CMPs for functional applications including the spatiotemporal control of cell adhesion and migration. The structural principles uncovered in this study open up opportunities for a new generation of collagen-mimetic therapeutics and materials.

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