7JVC image
Entry Detail
PDB ID:
7JVC
EMDB ID:
Title:
SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment
Biological Source:
PDB Version:
Deposition Date:
2020-08-20
Release Date:
2020-10-14
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Chain IDs:A, D (auth: B), G (auth: E)
Chain Length:1281
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:S2A4 Fab heavy chain
Chain IDs:B (auth: H), E (auth: C), H (auth: F)
Chain Length:228
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:S2A4 Fab light chain
Chain IDs:C (auth: L), F (auth: D), I (auth: G)
Chain Length:217
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

Analysis of the specificity and kinetics of neutralizing antibodies (nAbs) elicited by SARS-CoV-2 infection is crucial for understanding immune protection and identifying targets for vaccine design. In a cohort of 647 SARS-CoV-2-infected subjects, we found that both the magnitude of Ab responses to SARS-CoV-2 spike (S) and nucleoprotein and nAb titers correlate with clinical scores. The receptor-binding domain (RBD) is immunodominant and the target of 90% of the neutralizing activity present in SARS-CoV-2 immune sera. Whereas overall RBD-specific serum IgG titers waned with a half-life of 49 days, nAb titers and avidity increased over time for some individuals, consistent with affinity maturation. We structurally defined an RBD antigenic map and serologically quantified serum Abs specific for distinct RBD epitopes leading to the identification of two major receptor-binding motif antigenic sites. Our results explain the immunodominance of the receptor-binding motif and will guide the design of COVID-19 vaccines and therapeutics.

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Primary Citation of related structures