7JTI image
Deposition Date 2020-08-17
Release Date 2020-10-07
Last Version Date 2024-10-16
Entry Detail
PDB ID:
7JTI
Title:
Interphotoreceptor retinoid-binding protein (IRBP) in complex with a monoclonal antibody (F3F5 mAb5)
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Bos taurus (Taxon ID: 9913)
Host Organism:
Method Details:
Experimental Method:
Resolution:
7.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Retinol-binding protein 3
Gene (Uniprot):RBP3
Chain IDs:C (auth: A)
Chain Length:303
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Retinol-binding protein 3
Chain IDs:D (auth: B)
Chain Length:309
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Retinol-binding protein 3
Gene (Uniprot):RBP3
Chain IDs:E (auth: C)
Chain Length:300
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Retinol-binding protein 3
Gene (Uniprot):RBP3
Chain IDs:F (auth: D)
Chain Length:296
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:mAb5 Fab heavy chain
Chain IDs:B (auth: H)
Chain Length:221
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:mAb5 Fab light chain
Chain IDs:A (auth: L)
Chain Length:210
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Single particle cryo-EM of the complex between interphotoreceptor retinoid-binding protein and a monoclonal antibody.
Faseb J. 34 13918 13934 (2020)
PMID: 32860273 DOI: 10.1096/fj.202000796RR

Abstact

Interphotoreceptor retinoid-binding protein (IRBP) is a highly expressed protein secreted by rod and cone photoreceptors that has major roles in photoreceptor homeostasis as well as retinoid and polyunsaturated fatty acid transport between the neural retina and retinal pigment epithelium. Despite two crystal structures reported on fragments of IRBP and decades of research, the overall structure of IRBP and function within the visual cycle remain unsolved. Here, we studied the structure of native bovine IRBP in complex with a monoclonal antibody (mAb5) by cryo-electron microscopy, revealing the tertiary and quaternary structure at sufficient resolution to clearly identify the complex components. Complementary mass spectrometry experiments revealed the structure and locations of N-linked carbohydrate post-translational modifications. This work provides insight into the structure of IRBP, displaying an elongated, flexible three-dimensional architecture not seen among other retinoid-binding proteins. This work is the first step in elucidation of the function of this enigmatic protein.

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Primary Citation of related structures