7JTH image
Entry Detail
PDB ID:
7JTH
EMDB ID:
Title:
Cryo-EM structure of unliganded octameric prenyltransferase domain of Phomopsis amygdali fusicoccadiene synthase
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-08-17
Release Date:
2021-04-28
Method Details:
Experimental Method:
Resolution:
4.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Fusicoccadiene synthase
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:739
Number of Molecules:8
Biological Source:Phomopsis amygdali
Ligand Molecules
Primary Citation
Structural insight on assembly-line catalysis in terpene biosynthesis.
Nat Commun 12 3487 3487 (2021)
PMID: 34108468 DOI: 10.1038/s41467-021-23589-9

Abstact

Fusicoccadiene synthase from Phomopsis amygdali (PaFS) is a unique bifunctional terpenoid synthase that catalyzes the first two steps in the biosynthesis of the diterpene glycoside Fusicoccin A, a mediator of 14-3-3 protein interactions. The prenyltransferase domain of PaFS generates geranylgeranyl diphosphate, which the cyclase domain then utilizes to generate fusicoccadiene, the tricyclic hydrocarbon skeleton of Fusicoccin A. Here, we use cryo-electron microscopy to show that the structure of full-length PaFS consists of a central octameric core of prenyltransferase domains, with the eight cyclase domains radiating outward via flexible linker segments in variable splayed-out positions. Cryo-electron microscopy and chemical crosslinking experiments additionally show that compact conformations can be achieved in which cyclase domains are more closely associated with the prenyltransferase core. This structural analysis provides a framework for understanding substrate channeling, since most of the geranylgeranyl diphosphate generated by the prenyltransferase domains remains on the enzyme for cyclization to form fusicoccadiene.

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