ISDA

Deposition Date 2020-08-17

Release Date 2021-03-17

Last Version Date 2024-11-20

Entry Detail

PDB ID:

7JT7

Keywords:

VIRAL PROTEIN, HYDROLASE/INHIBITOR

Title:

Crystal structure of SARS-CoV-2 3CL protease in complex with compound 4

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.94 Å

R-Value Free:

0.22

R-Value Work:

0.17

R-Value Observed:

0.17

Space Group:

C 1 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:3C-like proteinase
Gene (Uniprot):rep
Chain IDs:A
Chain Length:306
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF05409 EC:2.7.7.48

Ligand Molecules

TG3

Primary Citation

Lead compounds for the development of SARS-CoV-2 3CL protease inhibitors.

Iketani, S, Forouhar, F, Liu, H, Hong, S.J, Lin, F.Y, Nair, M.S, Zask, A, Huang, Y, Xing, L, Stockwell, B.R, Chavez, A, Ho, D.D.Show

Nat Commun 12 2016 2016 (2021)

PMID: 33795671 DOI: 10.1038/s41467-021-22362-2

Abstact

We report the identification of three structurally diverse compounds - compound 4, GC376, and MAC-5576 - as inhibitors of the SARS-CoV-2 3CL protease. Structures of each of these compounds in complex with the protease revealed strategies for further development, as well as general principles for designing SARS-CoV-2 3CL protease inhibitors. These compounds may therefore serve as leads for the basis of building effective SARS-CoV-2 3CL protease inhibitors.

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Primary Citation of related structures