7JSY image
Deposition Date 2020-08-16
Release Date 2020-10-14
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7JSY
Keywords:
Title:
Proteinase K soaked with I3C determined by MicroED from a single milled microcrystal
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.78 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proteinase K
Gene (Uniprot):PROK
Chain IDs:A
Chain Length:279
Number of Molecules:1
Biological Source:Parengyodontium album
Ligand Molecules
Primary Citation
Ligand Incorporation into Protein Microcrystals for MicroED by On-Grid Soaking.
Structure 29 88 ? (2021)
PMID: 33007196 DOI: 10.1016/j.str.2020.09.003

Abstact

A high throughout method for soaking ligands into protein microcrystals on TEM grids is presented. Every crystal on the grid is soaked simultaneously using only standard cryoelectron microscopy vitrification equipment. The method is demonstrated using proteinase K microcrystals soaked with the 5-amino-2,4,6-triodoisophthalic acid (I3C) magic triangle. A soaked microcrystal is milled to a thickness of approximately 200 nm using a focused ion beam, and MicroED data are collected. A high-resolution structure of the protein with four ligands at high occupancy is determined. Both the number of ligands bound and their occupancy is higher using on-grid soaking of microcrystals compared with much larger crystals treated similarly and investigated by X-ray crystallography. These results indicate that on-grid soaking ligands into microcrystals results in efficient uptake of ligands into protein microcrystals.

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Primary Citation of related structures