7JSR image
Deposition Date 2020-08-15
Release Date 2021-06-09
Last Version Date 2025-05-14
Entry Detail
PDB ID:
7JSR
Keywords:
Title:
Crystal structure of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
6.27 Å
R-Value Free:
0.28
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NAD-specific glutamate dehydrogenase
Gene (Uniprot):gdh
Chain IDs:A, B
Chain Length:1611
Number of Molecules:2
Biological Source:Mycolicibacterium smegmatis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
Primary Citation
3D architecture and structural flexibility revealed in the subfamily of large glutamate dehydrogenases by a mycobacterial enzyme.
Commun Biol 4 684 684 (2021)
PMID: 34083757 DOI: 10.1038/s42003-021-02222-x

Abstact

Glutamate dehydrogenases (GDHs) are widespread metabolic enzymes that play key roles in nitrogen homeostasis. Large glutamate dehydrogenases composed of 180 kDa subunits (L-GDHs180) contain long N- and C-terminal segments flanking the catalytic core. Despite the relevance of L-GDHs180 in bacterial physiology, the lack of structural data for these enzymes has limited the progress of functional studies. Here we show that the mycobacterial L-GDH180 (mL-GDH180) adopts a quaternary structure that is radically different from that of related low molecular weight enzymes. Intersubunit contacts in mL-GDH180 involve a C-terminal domain that we propose as a new fold and a flexible N-terminal segment comprising ACT-like and PAS-type domains that could act as metabolic sensors for allosteric regulation. These findings uncover unique aspects of the structure-function relationship in the subfamily of L-GDHs.

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Primary Citation of related structures