7JSD image
Deposition Date 2020-08-14
Release Date 2021-08-25
Last Version Date 2023-10-18
Entry Detail
PDB ID:
7JSD
Title:
Hydroxylase homolog of BesD with Fe(II), alpha-ketoglutarate, and lysine
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Lysine hydroxylase
Chain IDs:A, B, C, D
Chain Length:263
Number of Molecules:4
Biological Source:Streptomyces roseifaciens
Primary Citation
Reaction pathway engineering converts a radical hydroxylase into a halogenase.
Nat.Chem.Biol. 18 171 179 (2022)
PMID: 34937913 DOI: 10.1038/s41589-021-00944-x

Abstact

FeII/α-ketoglutarate (FeII/αKG)-dependent enzymes offer a promising biocatalytic platform for halogenation chemistry owing to their ability to functionalize unactivated C-H bonds. However, relatively few radical halogenases have been identified to date, limiting their synthetic utility. Here, we report a strategy to expand the palette of enzymatic halogenation by engineering a reaction pathway rather than substrate selectivity. This approach could allow us to tap the broader class of FeII/αKG-dependent hydroxylases as catalysts by their conversion to halogenases. Toward this goal, we discovered active halogenases from a DNA shuffle library generated from a halogenase-hydroxylase pair using a high-throughput in vivo fluorescent screen coupled to an alkyne-producing biosynthetic pathway. Insights from sequencing halogenation-active variants along with the crystal structure of the hydroxylase enabled engineering of a hydroxylase to perform halogenation with comparable activity and higher selectivity than the wild-type halogenase, showcasing the potential of harnessing hydroxylases for biocatalytic halogenation.

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