7JRF image
Deposition Date 2020-08-12
Release Date 2021-03-24
Last Version Date 2023-10-18
Entry Detail
PDB ID:
7JRF
Keywords:
Title:
CO-CO-BOUND NITROGENASE MOFE-PROTEIN FROM A. VINELANDII
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.33 Å
R-Value Free:
0.15
R-Value Work:
0.11
R-Value Observed:
0.11
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nitrogenase molybdenum-iron protein alpha chain
Gene (Uniprot):nifD
Chain IDs:A, C
Chain Length:492
Number of Molecules:2
Biological Source:Azotobacter vinelandii
Polymer Type:polypeptide(L)
Molecule:Nitrogenase molybdenum-iron protein beta chain
Gene (Uniprot):nifK
Chain IDs:B, D
Chain Length:523
Number of Molecules:2
Biological Source:Azotobacter vinelandii
Primary Citation
Structural Characterization of Two CO Molecules Bound to the Nitrogenase Active Site.
Angew.Chem.Int.Ed.Engl. 60 5704 5707 (2021)
PMID: 33320413 DOI: 10.1002/anie.202015751

Abstact

As an approach towards unraveling the nitrogenase mechanism, we have studied the binding of CO to the active-site FeMo-cofactor. CO is not only an inhibitor of nitrogenase, but it is also a substrate, undergoing reduction to hydrocarbons (Fischer-Tropsch-type chemistry). The C-C bond forming capabilities of nitrogenase suggest that multiple CO or CO-derived ligands bind to the active site. Herein, we report a crystal structure with two CO ligands coordinated to the FeMo-cofactor of the molybdenum nitrogenase at 1.33 Å resolution. In addition to the previously observed bridging CO ligand between Fe2 and Fe6 of the FeMo-cofactor, a new ligand binding mode is revealed through a second CO ligand coordinated terminally to Fe6. While the relevance of this state to nitrogenase-catalyzed reactions remains to be established, it highlights the privileged roles for Fe2 and Fe6 in ligand binding, with multiple coordination modes available depending on the ligand and reaction conditions.

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