7JIU image
Entry Detail
PDB ID:
7JIU
Title:
HUMAN PI3KDELTA IN COMPLEX WITH COMPOUND 2F
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-07-23
Release Date:
2021-06-30
Method Details:
Experimental Method:
Resolution:
2.12 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Chain IDs:A
Chain Length:946
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Optimization of Versatile Oxindoles as Selective PI3K delta Inhibitors.
Acs Med.Chem.Lett. 11 2461 2469 (2020)
PMID: 33335668 DOI: 10.1021/acsmedchemlett.0c00441

Abstact

The 3,3-disubstituted oxindole moiety is a versatile and rigid three-dimensionally shaped scaffold. When engineered with a purine hinge-binding core, exceptionally selective PI3Kδ kinase inhibitors were discovered by exploiting small differences in isoform selectivity pockets. Crystal structures of early lead 2f bound to PI3Kδ and PI3Kα helped rationalize the high selectivity observed with 2f. By attenuating the lypophilicity and metabolic liabilities of an oxindole moiety, we improved the preclinical species PK and solubility and reduced adenosine uptake activity. The excellent potency and kinome selectivity of 7-azaoxindole 4d and spirooxindole 5d, together with a low plasma clearance and good half-life in rat and dog, supported a low once-daily predicted human dose.

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Primary Citation of related structures