7JIS image
Deposition Date 2020-07-23
Release Date 2020-12-30
Last Version Date 2024-04-03
Entry Detail
PDB ID:
7JIS
Title:
HUMAN PI3KDELTA IN COMPLEX WITH COMPOUND 2F
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Bos taurus (Taxon ID: 9913)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.42 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform
Gene (Uniprot):PIK3CD
Chain IDs:A
Chain Length:1018
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Phosphatidylinositol 3-kinase regulatory subunit alpha
Gene (Uniprot):PIK3R1
Chain IDs:B
Chain Length:169
Number of Molecules:1
Biological Source:Bos taurus
Ligand Molecules
Primary Citation
Optimization of Versatile Oxindoles as Selective PI3K delta Inhibitors.
Acs Med.Chem.Lett. 11 2461 2469 (2020)
PMID: 33335668 DOI: 10.1021/acsmedchemlett.0c00441

Abstact

The 3,3-disubstituted oxindole moiety is a versatile and rigid three-dimensionally shaped scaffold. When engineered with a purine hinge-binding core, exceptionally selective PI3Kδ kinase inhibitors were discovered by exploiting small differences in isoform selectivity pockets. Crystal structures of early lead 2f bound to PI3Kδ and PI3Kα helped rationalize the high selectivity observed with 2f. By attenuating the lypophilicity and metabolic liabilities of an oxindole moiety, we improved the preclinical species PK and solubility and reduced adenosine uptake activity. The excellent potency and kinome selectivity of 7-azaoxindole 4d and spirooxindole 5d, together with a low plasma clearance and good half-life in rat and dog, supported a low once-daily predicted human dose.

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Primary Citation of related structures