7JIE image
Deposition Date 2020-07-23
Release Date 2021-06-30
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7JIE
Keywords:
Title:
Structure of GII.4 P-domain in Complex with NORO-320 FAB
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:VP1
Chain IDs:A, B
Chain Length:307
Number of Molecules:2
Biological Source:Norovirus Hu/GII.4/Sydney/NSW0514/2012/AU
Polymer Type:polypeptide(L)
Molecule:IgA Fab Heavy Chain
Chain IDs:C, E
Chain Length:238
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:IgA Fab Light Chain
Chain IDs:D, F
Chain Length:219
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Broadly cross-reactive human antibodies that inhibit genogroup I and II noroviruses.
Nat Commun 12 4320 4320 (2021)
PMID: 34262046 DOI: 10.1038/s41467-021-24649-w

Abstact

The rational development of norovirus vaccine candidates requires a deep understanding of the antigenic diversity and mechanisms of neutralization of the virus. Here, we isolate and characterize a panel of broadly cross-reactive naturally occurring human monoclonal IgMs, IgAs and IgGs reactive with human norovirus (HuNoV) genogroup I or II (GI or GII). We note three binding patterns and identify monoclonal antibodies (mAbs) that neutralize at least one GI or GII HuNoV strain when using a histo-blood group antigen (HBGA) blocking assay. The HBGA blocking assay and a virus neutralization assay using human intestinal enteroids reveal that the GII-specific mAb NORO-320, mediates HBGA blocking and neutralization of multiple GII genotypes. The Fab form of NORO-320 neutralizes GII.4 infection more potently than the mAb, however, does not block HBGA binding. The crystal structure of NORO-320 Fab in complex with GII.4 P-domain shows that the antibody recognizes a highly conserved region in the P-domain distant from the HBGA binding site. Dynamic light scattering analysis of GII.4 virus-like particles with mAb NORO-320 shows severe aggregation, suggesting neutralization is by steric hindrance caused by multivalent cross-linking. Aggregation was not observed with the Fab form of NORO-320, suggesting that this clone also has additional inhibitory features.

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Primary Citation of related structures