7JI2 image
Entry Detail
PDB ID:
7JI2
Keywords:
Title:
Crystal Structure of H2-Kb in complex with a OVA mutant peptide
Biological Source:
PDB Version:
Deposition Date:
2020-07-22
Release Date:
2020-12-23
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:H-2 class I histocompatibility antigen, K-B alpha chain
Chain IDs:A, C (auth: D)
Chain Length:281
Number of Molecules:2
Biological Source:Mus musculus bactrianus
Polymer Type:polypeptide(L)
Description:Beta-2-microglobulin
Chain IDs:B, D (auth: E)
Chain Length:100
Number of Molecules:2
Biological Source:Mus musculus bactrianus
Polymer Type:polypeptide(L)
Description:OVA mutant peptide
Chain IDs:E (auth: C), F
Chain Length:8
Number of Molecules:2
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Pre-T cell receptors topologically sample self-ligands during thymocyte beta-selection.
Science 371 181 185 (2021)
PMID: 33335016 DOI: 10.1126/science.abe0918

Abstact

Self-discrimination, a critical but ill-defined molecular process programmed during thymocyte development, requires myriad pre-T cell receptors (preTCRs) and αβTCRs. Using x-ray crystallography, we show how a preTCR applies the concave β-sheet surface of its single variable domain (Vβ) to "horizontally" grab the protruding MHC α2-helix. By contrast, αβTCRs purpose all six complementarity-determining region (CDR) loops of their paired VαVβ module to recognize peptides bound to major histocompatibility complex molecules (pMHCs) in "vertical" head-to-head binding. The preTCR topological fit ensures that CDR3β reaches the peptide's featured C-terminal segment for pMHC sampling, establishing the subsequent αβTCR canonical docking mode. "Horizontal" docking precludes germline CDR1β- and CDR2β-MHC binding to broaden β-chain repertoire diversification before αβTCR-mediated selection refinement. Thus, one subunit successively attunes the recognition logic of related multicomponent receptors.

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Primary Citation of related structures