7FJN image
Deposition Date 2021-08-04
Release Date 2022-04-27
Last Version Date 2024-10-30
Entry Detail
PDB ID:
7FJN
Title:
Cryo-EM structure of South African (B.1.351) SARS-CoV-2 spike glycoprotein in complex with two T6 Fab
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.25 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein,Envelope glycoprotein
Gene (Uniprot):S
Mutagens:R682G,R683S,R685S,K968P,V969P,S305T
Chain IDs:A, B, C
Chain Length:1280
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2, Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:T6 heavy chain
Chain IDs:D (auth: H), E (auth: I)
Chain Length:117
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:T6 light chain
Chain IDs:F (auth: J), G (auth: L)
Chain Length:113
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
RBD trimer mRNA vaccine elicits broad and protective immune responses against SARS-CoV-2 variants.
Iscience 25 104043 104043 (2022)
PMID: 35291264 DOI: 10.1016/j.isci.2022.104043

Abstact

With the rapid emergence and spread of SARS-CoV-2 variants, development of vaccines with broad and potent protectivity has become a global priority. Here, we designed a lipid nanoparticle-encapsulated, nucleoside-unmodified mRNA (mRNA-LNP) vaccine encoding the trimerized receptor-binding domain (RBD trimer) and showed its robust capability in inducing broad and protective immune responses against wild-type and major variants of concern (VOCs) in the mouse model of SARS-CoV-2 infection. The protectivity was correlated with RBD-specific B cell responses especially the long-lived plasma B cells in bone marrow, strong ability in triggering BCR clustering, and downstream signaling. Monoclonal antibodies isolated from vaccinated animals demonstrated broad and potent neutralizing activity against VOCs tested. Structure analysis of one representative antibody identified a novel epitope with a high degree of conservation among different variants. Collectively, these results demonstrate that the RBD trimer mRNA vaccine serves as a promising vaccine candidate against SARS-CoV-2 variants and beyond.

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Primary Citation of related structures