7FJ1 image
Deposition Date 2021-08-02
Release Date 2022-06-22
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7FJ1
Keywords:
Title:
Cryo-EM structure of pseudorabies virus C-capsid
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.43 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Gene (Uniprot):UL19
Chain IDs:A (auth: 0), E (auth: A), U (auth: S), W (auth: U), BA (auth: a), DA (auth: e), EA (auth: f), FA (auth: g), KA (auth: l), LA (auth: m), MA (auth: n), OA (auth: p), PA (auth: q), TA (auth: u), VA (auth: w), XA (auth: y)
Chain Length:1330
Number of Molecules:16
Biological Source:Suid alphaherpesvirus 1
Polymer Type:polypeptide(L)
Molecule:Triplex capsid protein 2
Gene (Uniprot):UL18
Chain IDs:B (auth: 1), C (auth: 2), D (auth: 3), IA (auth: j), JA (auth: k), NA (auth: o), RA (auth: s), UA (auth: v), WA (auth: x), YA (auth: z)
Chain Length:296
Number of Molecules:10
Biological Source:Suid alphaherpesvirus 1
Polymer Type:polypeptide(L)
Molecule:Capsid vertex component 1
Gene (Uniprot):UL17
Chain IDs:F (auth: B)
Chain Length:597
Number of Molecules:1
Biological Source:Suid alphaherpesvirus 1
Polymer Type:polypeptide(L)
Molecule:Small capsomere-interacting protein
Gene (Uniprot):UL35
Chain IDs:G (auth: E), H (auth: F), I (auth: G), J (auth: H), K (auth: I), L (auth: J), M (auth: K), N (auth: L), O (auth: M), P (auth: N), Q (auth: O), R (auth: P), S (auth: Q), T (auth: R), X (auth: V)
Chain Length:103
Number of Molecules:15
Biological Source:Suid alphaherpesvirus 1
Polymer Type:polypeptide(L)
Molecule:Triplex capsid protein 1
Gene (Uniprot):CP(UL38)
Chain IDs:V (auth: T), GA (auth: h), HA (auth: i), QA (auth: r), SA (auth: t)
Chain Length:368
Number of Molecules:5
Biological Source:Suid alphaherpesvirus 1
Polymer Type:polypeptide(L)
Molecule:DNA packaging tegument protein UL25
Gene (Uniprot):UL25
Chain IDs:Y (auth: X), CA (auth: c)
Chain Length:534
Number of Molecules:2
Biological Source:Suid alphaherpesvirus 1
Polymer Type:polypeptide(L)
Molecule:VP1/2
Gene (Uniprot):UL36
Chain IDs:Z (auth: Y), AA (auth: Z)
Chain Length:1330
Number of Molecules:2
Biological Source:Suid alphaherpesvirus 1
Ligand Molecules
Primary Citation
Structures of pseudorabies virus capsids.
Nat Commun 13 1533 1533 (2022)
PMID: 35318331 DOI: 10.1038/s41467-022-29250-3

Abstact

Pseudorabies virus (PRV) is a major etiological agent of swine infectious diseases and is responsible for significant economic losses in the swine industry. Recent data points to human viral encephalitis caused by PRV infection, suggesting that PRV may be able to overcome the species barrier to infect humans. To date, there is no available therapeutic for PRV infection. Here, we report the near-atomic structures of the PRV A-capsid and C-capsid, and illustrate the interaction that occurs between these subunits. We show that the C-capsid portal complex is decorated with capsid-associated tegument complexes. The PRV capsid structure is highly reminiscent of other α-herpesviruses, with some additional structural features of β- and γ-herpesviruses. These results illustrate the structure of the PRV capsid and elucidate the underlying assembly mechanism at the molecular level. This knowledge may be useful for the development of oncolytic agents or specific therapeutics against this arm of the herpesvirus family.

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Primary Citation of related structures