7FIX image
Deposition Date 2021-08-01
Release Date 2022-09-21
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7FIX
Keywords:
Title:
Cryo-EM structure of cyanobacterial photosystem I in the presence of ferredoxin and cytochrome c6
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.97 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA
Chain IDs:A (auth: A1), N (auth: A2), AA (auth: A3)
Chain Length:755
Number of Molecules:3
Biological Source:Thermosynechococcus vestitus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB
Chain IDs:B (auth: B1), O (auth: B2), BA (auth: B3)
Chain Length:741
Number of Molecules:3
Biological Source:Thermosynechococcus vestitus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:C (auth: C1), P (auth: C2), CA (auth: C3)
Chain Length:81
Number of Molecules:3
Biological Source:Thermosynechococcus vestitus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II
Gene (Uniprot):psaD
Chain IDs:D (auth: D1), Q (auth: D2), DA (auth: D3)
Chain Length:139
Number of Molecules:3
Biological Source:Thermosynechococcus vestitus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IV
Gene (Uniprot):psaE
Chain IDs:E (auth: E1), R (auth: E2), EA (auth: E3)
Chain Length:76
Number of Molecules:3
Biological Source:Thermosynechococcus vestitus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit III
Gene (Uniprot):psaF
Chain IDs:F (auth: F1), S (auth: F2), FA (auth: F3)
Chain Length:174
Number of Molecules:3
Biological Source:Thermosynechococcus vestitus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):psaI
Chain IDs:G (auth: I1), T (auth: I2), GA (auth: I3)
Chain Length:38
Number of Molecules:3
Biological Source:Thermosynechococcus vestitus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IX
Gene (Uniprot):psaJ
Chain IDs:H (auth: J1), U (auth: J2), HA (auth: J3)
Chain Length:41
Number of Molecules:3
Biological Source:Thermosynechococcus vestitus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit PsaK
Gene (Uniprot):psaK
Chain IDs:I (auth: K1), V (auth: K2), IA (auth: K3)
Chain Length:83
Number of Molecules:3
Biological Source:Thermosynechococcus vestitus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XI
Gene (Uniprot):psaL
Chain IDs:J (auth: L1), W (auth: L2), JA (auth: L3)
Chain Length:155
Number of Molecules:3
Biological Source:Thermosynechococcus vestitus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XII
Gene (Uniprot):psaM
Chain IDs:K (auth: M1), X (auth: M2), KA (auth: M3)
Chain Length:31
Number of Molecules:3
Biological Source:Thermosynechococcus vestitus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ferredoxin-1
Gene (Uniprot):petF1
Chain IDs:L (auth: R1), Y (auth: R2), LA (auth: R3)
Chain Length:98
Number of Molecules:3
Biological Source:Thermosynechococcus vestitus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I 4.8K protein
Gene (Uniprot):tsr0813
Chain IDs:M (auth: X1), Z (auth: X2), MA (auth: X3)
Chain Length:39
Number of Molecules:3
Biological Source:Thermosynechococcus vestitus BP-1
Primary Citation
Structure of cyanobacterial photosystem I complexed with ferredoxin at 1.97 angstrom resolution.
Commun Biol 5 951 951 (2022)
PMID: 36097054 DOI: 10.1038/s42003-022-03926-4

Abstact

Photosystem I (PSI) is a light driven electron pump transferring electrons from Cytochrome c6 (Cyt c6) to Ferredoxin (Fd). An understanding of this electron transfer process is hampered by a paucity of structural detail concerning PSI:Fd interface and the possible binding sites of Cyt c6. Here we describe the high resolution cryo-EM structure of Thermosynechococcus elongatus BP-1 PSI in complex with Fd and a loosely bound Cyt c6. Side chain interactions at the PSI:Fd interface including bridging water molecules are visualized in detail. The structure explains the properties of mutants of PsaE and PsaC that affect kinetics of Fd binding and suggests a molecular switch for the dissociation of Fd upon reduction. Calorimetry-based thermodynamic analyses confirms a single binding site for Fd and demonstrates that PSI:Fd complexation is purely driven by entropy. A possible reaction cycle for the efficient transfer of electrons from Cyt c6 to Fd via PSI is proposed.

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