7FDA image
Deposition Date 2021-07-16
Release Date 2021-12-22
Last Version Date 2024-06-12
Entry Detail
PDB ID:
7FDA
Keywords:
MOTOR PROTEIN
Title:
CryoEM Structure of Reconstituted V-ATPase, state1
Biological Source:
Source Organism:
Saccharomyces cerevisiae S288C (Taxon ID: 559292)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
4.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
7FDA validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Yeast Vacuolar ATPase A subunit
Chain IDs:A, C, E
Chain Length:160
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae S288C
UniProt ID:P17255 Pfam ID:PF02874, PF16886, PF00006, PF22919
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit B
Gene (Uniprot):VMA2
Chain IDs:B, D, F
Chain Length:517
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae S288C
UniProt ID:P16140 Pfam ID:PF02874, PF00006, PF22919
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit E
Gene (Uniprot):VMA4
Chain IDs:G, I, K
Chain Length:233
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae S288C
UniProt ID:P22203 Pfam ID:PF01991
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit G
Chain IDs:H, J, L
Chain Length:122
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae S288C
UniProt ID:P48836 Pfam ID:PF03179
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit D
Gene (Uniprot):VMA8
Chain IDs:M
Chain Length:256
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
UniProt ID:P32610 Pfam ID:PF01813
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit F
Gene (Uniprot):VMA7
Chain IDs:N
Chain Length:118
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
UniProt ID:P39111 Pfam ID:PF01990
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit C
Gene (Uniprot):VMA5
Chain IDs:O
Chain Length:392
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
UniProt ID:P31412 Pfam ID:PF03223
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fusion of yeast V-type proton ATPase subunit H(NT) and human V-type proton ATPase subunit H(CT)
Gene (Uniprot):VMA13, ATP6V1H
Chain IDs:P
Chain Length:469
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C, Homo sapiens
UniProt ID:P41807,Q9UI12 Pfam ID:PF03224, PF11698
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Yeast Vacuolar ATPase a subunit
Gene (Uniprot):VPH1
Chain IDs:Q
Chain Length:840
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
UniProt ID:P32563 Pfam ID:PF01496
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit d
Gene (Uniprot):VMA6
Chain IDs:R (auth: S)
Chain Length:345
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
UniProt ID:P32366 Pfam ID:PF01992
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit c''
Gene (Uniprot):VMA16
Chain IDs:S (auth: T)
Chain Length:213
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
UniProt ID:P23968 Pfam ID:PF00137
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit c'
Gene (Uniprot):VMA11
Chain IDs:T (auth: U)
Chain Length:164
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
UniProt ID:P32842 Pfam ID:PF00137
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit c
Gene (Uniprot):VMA3
Chain IDs:U (auth: V), V (auth: W), W (auth: X), X (auth: Y), Y (auth: Z), Z (auth: a), AA (auth: b), BA (auth: c)
Chain Length:160
Number of Molecules:8
Biological Source:Saccharomyces cerevisiae S288C
UniProt ID:P25515 Pfam ID:PF00137
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit e
Gene (Uniprot):VMA9
Chain IDs:CA (auth: d)
Chain Length:517
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
UniProt ID:Q3E7B6 Pfam ID:PF05493
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V0 assembly protein 1
Gene (Uniprot):VOA1
Chain IDs:DA (auth: e)
Chain Length:617
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
UniProt ID:P53262 Pfam ID:PF20520
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Yeast Vacuolar ATPase f subunit
Gene (Uniprot):YPR170W-B
Chain IDs:EA (auth: f)
Chain Length:85
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
UniProt ID:P0C5R9
Ligand Molecules
NA
Primary Citation
CryoEM Structures of Reconstituted V-ATPase and Oxr1-bound V1 Reveal a Novel Mechanism of Regulation.
Embo J. ? ? ? (2021)
Primary Citation of related structures
7FDA