7FAE image
Deposition Date 2021-07-06
Release Date 2021-12-22
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7FAE
Title:
S protein of SARS-CoV-2 in complex bound with P36-5D2(state2)
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.65 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutagens:R682G, R683S, R685S, F817P, A892P, A899P, A942P,K986P, V987P
Chain IDs:A, B, C
Chain Length:1298
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Molecule:P36-5D2 heavy chain
Chain IDs:D (auth: H), F (auth: e), H (auth: h)
Chain Length:471
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:P36-5D2 light chain
Chain IDs:E (auth: d), G (auth: g), I (auth: L)
Chain Length:233
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A Potent and Protective Human Neutralizing Antibody Against SARS-CoV-2 Variants.
Front Immunol 12 766821 766821 (2021)
PMID: 34966387 DOI: 10.3389/fimmu.2021.766821

Abstact

As severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants continue to emerge and spread around the world, antibodies and vaccines to confer broad and potent neutralizing activity are urgently needed. Through the isolation and characterization of monoclonal antibodies (mAbs) from individuals infected with SARS-CoV-2, we identified one antibody, P36-5D2, capable of neutralizing the major SARS-CoV-2 variants of concern. Crystal and electron cryo-microscopy (cryo-EM) structure analyses revealed that P36-5D2 targeted to a conserved epitope on the receptor-binding domain of the spike protein, withstanding the three key mutations-K417N, E484K, and N501Y-found in the variants that are responsible for escape from many potent neutralizing mAbs, including some already approved for emergency use authorization (EUA). A single intraperitoneal (IP) injection of P36-5D2 as a prophylactic treatment completely protected animals from challenge of infectious SARS-CoV-2 Alpha and Beta. Treated animals manifested normal body weight and were devoid of infection-associated death up to 14 days. A substantial decrease of the infectious virus in the lungs and brain, as well as reduced lung pathology, was found in these animals compared to the controls. Thus, P36-5D2 represents a new and desirable human antibody against the current and emerging SARS-CoV-2 variants.

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Protein

Chemical

Disease

Primary Citation of related structures