7F8K image
Deposition Date 2021-07-02
Release Date 2021-09-08
Last Version Date 2021-10-13
Entry Detail
PDB ID:
7F8K
Keywords:
Title:
Room temperature structure of bacterial copper amine oxidase determined by serial femtosecond crystallography
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Phenylethylamine oxidase
Chain IDs:A
Chain Length:638
Number of Molecules:1
Biological Source:Arthrobacter globiformis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TPQ A TYR modified residue
Ligand Molecules
Primary Citation
Microcrystal preparation for serial femtosecond X-ray crystallography of bacterial copper amine oxidase
Acta Crystallogr.,Sect.F 77 356 363 (2021)
PMID: 34605440 DOI: 10.1107/S2053230X21008967

Abstact

Recent advances in serial femtosecond X-ray crystallography (SFX) using X-ray free-electron lasers have paved the way for determining radiation-damage-free protein structures under nonfreezing conditions. However, the large-scale preparation of high-quality microcrystals of uniform size is a prerequisite for SFX, and this has been a barrier to its widespread application. Here, a convenient method for preparing high-quality microcrystals of a bacterial quinoprotein enzyme, copper amine oxidase from Arthrobacter globiformis, is reported. The method consists of the mechanical crushing of large crystals (5-15 mm3), seeding the crushed crystals into the enzyme solution and standing for 1 h at an ambient temperature of ∼26°C, leading to the rapid formation of microcrystals with a uniform size of 3-5 µm. The microcrystals diffracted X-rays to a resolution beyond 2.0 Å in SFX measurements at the SPring-8 Angstrom Compact Free Electron Laser facility. The damage-free structure determined at 2.2 Å resolution was essentially identical to that determined previously by cryogenic crystallography using synchrotron X-ray radiation.

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Primary Citation of related structures