7F8D image
Deposition Date 2021-07-02
Release Date 2022-02-23
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7F8D
Keywords:
Title:
Malate Dehydrogenase from Geobacillus stearothermophilus (gs-MDH) G218Y mutant
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.25
R-Value Work:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Malate dehydrogenase
Gene (Uniprot):mdh
Mutagens:G218Y
Chain IDs:A, B, C, D
Chain Length:332
Number of Molecules:4
Biological Source:Geobacillus stearothermophilus
Ligand Molecules
Primary Citation
Increasing loop flexibility affords low-temperature adaptation of a moderate thermophilic malate dehydrogenase from Geobacillus stearothermophilus.
Protein Eng.Des.Sel. 34 ? ? (2021)
PMID: 34850194 DOI: 10.1093/protein/gzab026

Abstact

Malate dehydrogenase (MDH) catalyzes the reversible reduction of nicotinamide adenine dinucleotide from oxaloacetate to L-malate. MDH from moderate thermophilic Geobacillus stearothermophilus (gs-MDH) has high thermal stability and substrate specificity and is used as a diagnostic reagent. In this study, gs-MDH was engineered to increase its catalytic activity at low temperatures. Based on sequential and structural comparison with lactate dehydrogenase from G. stearothermophilus, we selected G218 as a mutation site to increase the loop flexibility pivotal for MDH catalysis. The G218 mutants showed significantly higher specific activities than the wild type at low temperatures and maintained thermal stability. The crystal structure of the G218Y mutant, which had the highest catalytic efficiency among all the G218 mutants, suggested that the flexibility of the mobile loop was successfully increased by the bulky side chain. Therefore, this study demonstrated the low-temperature adaptation of MDH by facilitating conformational changes during catalysis.

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Primary Citation of related structures