7F7E image
Deposition Date 2021-06-29
Release Date 2022-02-02
Last Version Date 2024-10-16
Entry Detail
PDB ID:
7F7E
Keywords:
Title:
SARS-CoV-2 S protein RBD in complex with A5-10 Fab
Biological Source:
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.49 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Heavy chain of A5-10 Fab
Chain IDs:A (auth: C)
Chain Length:227
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:C (auth: E)
Chain Length:198
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Molecule:Light chain of A5-10 Fab
Chain IDs:B (auth: L)
Chain Length:205
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Etesevimab in combination with JS026 neutralizing SARS-CoV-2 and its variants.
Emerg Microbes Infect 11 548 551 (2022)
PMID: 35060840 DOI: 10.1080/22221751.2022.2032374

Abstact

The neutralizing antibody is a potential therapeutic for the ongoing COVID-19 pandemic. As an antiviral agent, numerous mAbs recognize the epitopes that overlap with ACE2-binding sites in the SARS-CoV-2-RBD. Some studies have shown that residual changes on the spike protein can significantly decrease the efficiency of neutralizing antibodies. To address this issue, a therapeutic cocktail could be an effective countermeasure. In the present study, we isolated a fully human neutralizing antibody, JS026, from a convalescent patient. The comparative analysis revealed that JS026 binding to SARS-CoV-2-RBD mainly located between epitopes for class 2 and class 3 mAbs as opposed to that of class 1 (etesevimab) antibodies. A cocktail of etesevimab and JS026 increased neutralizing efficacy against both wild-type SARS-CoV-2 and the recent emergence of Alpha, Beta, Gamma, and Delta variants. JS026 and the cocktail reduced virus titers in the infected lungs of hACE2 transgenic mice and relieved pathological changes. These findings would benefit antibody-based therapeutic countermeasures in the treatment of COVID-19.

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Primary Citation of related structures
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