7F0H image
Deposition Date 2021-06-04
Release Date 2021-12-29
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7F0H
Keywords:
Title:
Structural and functional characterization of bovine G1P[5] rotavirus VP8* protein
Biological Source:
Source Organism:
Rotavirus A (Taxon ID: 28875)
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
I 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Outer capsid protein VP8*
Chain IDs:A, B
Chain Length:161
Number of Molecules:2
Biological Source:Rotavirus A
Primary Citation
Structural and functional characterization of bovine G1P[5] rotavirus VP8* protein.
Virology 563 116 125 (2021)
PMID: 34509703 DOI: 10.1016/j.virol.2021.08.009

Abstact

The widely used rotavirus (RV) vaccine, Rotateq, contained reassortment strains of human and bovine G1/2/3/4P[5] RVs. The functional and structural features of bovine G1P[5] VP8* were investigated. Bovine G1P[5] VP8* was identified to interact with sialic acids and sialic acid-containing glycans. In addition, P[5] VP8* recognized α-Gal histo-blood group antigens (HBGAs). Bovine G1P[5] VP8* did not hemagglutinate the tested red blood cells. The crystal structure of P[5] VP8* was determined at 1.7 Å. Structural superimposition revealed that P[5] VP8* was most close to human P[8] VP8*, while much further to VP8*s of porcine P[7] and rhesus P[3]. Sequence alignment showed that amino acids of the putative glycan binding site in P[5] VP8* were different to those in P[3]/P[7] VP8*s, indicating that P[5] VP8* may interact with glycans using different mechanism. This study provided more understanding of P[5] RV infection and the interactions of RV VP8* and glycans.

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