7EXO image
Entry Detail
PDB ID:
7EXO
Title:
Structure of legume lectin domain from Methanocaldococcus jannaschii in mannose bound form
Biological Source:
PDB Version:
Deposition Date:
2021-05-28
Release Date:
2022-06-01
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.18
R-Value Work:
0.15
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Legume lectin
Chain IDs:A
Chain Length:209
Number of Molecules:1
Biological Source:Methanocaldococcus jannaschii DSM 2661
Primary Citation
Crystal structure of an L-type lectin domain from archaea.
Proteins 91 456 465 (2023)
PMID: 36301308 DOI: 10.1002/prot.26440

Abstact

The crystal structures of an L-type lectin domain from Methanocaldococcus jannaschii in apo and mannose-bound forms have been determined. A thorough investigation of L-type lectin domains from several organisms provides insight into the differences in these domains from different kingdoms of life. While the overall fold of the L-type lectin domain is conserved, differences in the lengths of the carbohydrate-binding loops and significant variations in the Mn2+ -binding site compared to the Ca2+ -binding site are observed. Furthermore, the sequence and phylogenetic analyses suggest that the archaeal L-type lectin domain is evolutionarily closer to the plant legume lectins than to its bacterial or animal counterparts. This is the first report of the biochemical, structural, sequence, and phylogenetic analyses of an L-type lectin domain from archaea and serves to enhance our understanding of the species-specific differences and evolution of L-type lectin domains.

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