ISDA

Deposition Date 2021-05-21

Release Date 2022-08-03

Last Version Date 2024-01-17

Entry Detail

PDB ID:

7EVN

Keywords:

SPLICING

Title:

The cryo-EM structure of the DDX42-SF3b complex

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.60 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Splicing factor 3B subunit 3
Gene (Uniprot):SF3B3
Chain IDs:D (auth: A)
Chain Length:1250
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q15393 Pfam ID:PF10433, PF03178

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Splicing factor 3B subunit 5
Gene (Uniprot):SF3B5
Chain IDs:A (auth: B)
Chain Length:86
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BWJ5 Pfam ID:PF07189

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Splicing factor 3B subunit 1
Gene (Uniprot):SF3B1
Chain IDs:B (auth: C)
Chain Length:872
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O75533 Pfam ID:PF22646

Protein Blast

Polymer Type:polypeptide(L)
Molecule:PHD finger-like domain-containing protein 5A
Gene (Uniprot):PHF5A
Chain IDs:C (auth: D)
Chain Length:110
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q7RTV0 Pfam ID:PF03660

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ATP-dependent RNA helicase DDX42
Gene (Uniprot):DDX42
Chain IDs:E
Chain Length:958
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q86XP3 Pfam ID:PF00270, PF00271

Ligand Molecules

Primary Citation

Structural insights into branch site proofreading by human spliceosome

Zhang, X, Zhan, X, Bian, T, Yang, F, Li, P, Lu, Y, Xing, Z, Fan, R, Zhang, Q.C, Shi, Y.Show

Nat.Struct.Mol.Biol. ? ? ? (2024)

DOI: 10.1038/s41594-023-01188-0

Primary Citation of related structures