7ESO image
Deposition Date 2021-05-11
Release Date 2022-03-23
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7ESO
Keywords:
Title:
Structure and mutation analysis of the hexameric P4 from Pseudomonas aeruginosa phage phiYY
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.45 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
H 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Packaging NTPase
Gene (Uniprot):phiYY_sL4
Chain IDs:A, B, C (auth: H), D (auth: G), E (auth: C), F (auth: D), G (auth: E), H (auth: F)
Chain Length:354
Number of Molecules:8
Biological Source:Pseudomonas phage phiYY
Primary Citation
Structure and mutation analysis of the hexameric P4 from Pseudomonas aeruginosa phage phiYY.
Int.J.Biol.Macromol. 194 42 49 (2022)
PMID: 34856215 DOI: 10.1016/j.ijbiomac.2021.11.129

Abstact

phiYY is a foremost member of Cystoviridae isolated from Pseudomonas aeruginosa. Its P4 protein with NTPase activity is a molecular motor for their genome packing during viral particle assembly. Previously studies on the P4 from four Pseudomonas phages phi6, phi8, phi12 and phi13 reveal that despite of belonging to the same protein family, they are unique in sequence, structure and biochemical properties. To better understand the structure and function of phiYY P4, four crystal structures of phiYY P4 in apo-form or combined with different ligands were solved at the resolution between 1.85 Å and 2.43 Å, which showed drastic conformation change of the H1 motif in ligand-bound forms compared with in apo-form, a four residue-mutation at the ligand binding pocket abolished its ATPase activity. Furthermore, the truncation mutation of the 50 residues at the C-terminal did not impair the hexamerization and ATP hydrolysis.

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Primary Citation of related structures
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