7ESI image
Deposition Date 2021-05-11
Release Date 2022-02-09
Last Version Date 2024-10-30
Entry Detail
PDB ID:
7ESI
Keywords:
Title:
Crystal structure of the collagenase unit of a Vibrio collagenase from Vibrio harveyi VHJR7 at 1. 8 angstrom resolution.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Collagenase unit (CU)
Chain IDs:A
Chain Length:613
Number of Molecules:1
Biological Source:Vibrio harveyi VHJR7
Polymer Type:polypeptide(L)
Molecule:Peptide P1
Chain IDs:B
Chain Length:14
Number of Molecules:1
Biological Source:Vibrio harveyi VHJR7
Polymer Type:polypeptide(L)
Molecule:Peptide P2
Chain IDs:C
Chain Length:12
Number of Molecules:1
Biological Source:Vibrio harveyi VHJR7
Primary Citation
Structure of Vibrio collagenase VhaC provides insight into the mechanism of bacterial collagenolysis.
Nat Commun 13 566 566 (2022)
PMID: 35091565 DOI: 10.1038/s41467-022-28264-1

Abstact

The collagenases of Vibrio species, many of which are pathogens, have been regarded as an important virulence factor. However, there is little information on the structure and collagenolytic mechanism of Vibrio collagenase. Here, we report the crystal structure of the collagenase module (CM) of Vibrio collagenase VhaC and the conformation of VhaC in solution. Structural and biochemical analyses and molecular dynamics studies reveal that triple-helical collagen is initially recognized by the activator domain, followed by subsequent cleavage by the peptidase domain along with the closing movement of CM. This is different from the peptidolytic mode or the proposed collagenolysis of Clostridium collagenase. We propose a model for the integrated collagenolytic mechanism of VhaC, integrating the functions of VhaC accessory domains and its collagen degradation pattern. This study provides insight into the mechanism of bacterial collagenolysis and helps in structure-based drug design targeting of the Vibrio collagenase.

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Primary Citation of related structures
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