7EO6 image
Entry Detail
PDB ID:
7EO6
Keywords:
Title:
X-ray structure analysis of xylanase
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-04-21
Release Date:
2021-10-13
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Endo-1,4-beta-xylanase
Chain IDs:A, B
Chain Length:195
Number of Molecules:2
Biological Source:Actinobacteria bacterium
Ligand Molecules
Primary Citation
Characterization and structural analysis of a thermophilic GH11 xylanase from compost metatranscriptome.
Appl.Microbiol.Biotechnol. 105 7757 7767 (2021)
PMID: 34553251 DOI: 10.1007/s00253-021-11587-2

Abstact

Xylanase is efficient for xylan degradation and widely applied in industries. We found a GH11 family xylanase (Xyn11A) with high thermostability and catalytic activity from compost metatranscriptome. This xylanase has the optimal reaction temperature at 80 °C with the activity of 2907.3 U/mg. The X-ray crystallographic structure shows a typical "right hand" architecture, which is the characteristics of the GH11 family enzymes. Comparing it with the mesophilic XYN II, a well-studied GH11 xylanase from Trichoderma reesei, Xyn11A is more compact with more H-bonds. Our mutagenic results show that the electrostatic interactions in the thumb and palm region of Xyn11A could result in its high thermostability and activity. Introducing a disulfide bond at the N-terminus further increased its optimal reaction temperature to 90 °C with augmented activity. KEY POINTS: • A hyperthermophilic xylanase with high activity was discovered using the metatranscriptomic method. • The mechanisms of thermophilicity and high activity were revealed using X-ray crystallography, mutagenesis, and molecular dynamics simulations. • The thermostability and activity were further improved by introducing a disulfide bond.

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