ISDA

Deposition Date 2021-04-16

Release Date 2022-04-06

Last Version Date 2024-11-06

Entry Detail

PDB ID:

7ENG

Keywords:

VIRAL PROTEIN

Title:

Cryo-EM structure of the SARS-CoV-2 S-6P in complex with Fab30 (local refinement of the RBD and Fab30)

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.59 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutations:R682G, R683S, R685S, F817P, A892P, A899P, A942P, K986P, V987P
Chain IDs:C (auth: B)
Chain Length:1288
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601

Polymer Type:polypeptide(L)
Molecule:Heavy chain of Fab30
Chain IDs:B (auth: H)
Chain Length:230
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Light chain of Fab30
Chain IDs:A (auth: L)
Chain Length:220
Number of Molecules:1
Biological Source:Homo sapiens

Ligand Molecules

Primary Citation

A potent human monoclonal antibody with pan-neutralizing activities directly dislocates S trimer of SARS-CoV-2 through binding both up and down forms of RBD

Wang, X, Hu, A, Chen, X, Zhang, Y, Yu, F, Yue, S, Li, A, Zhang, J, Pan, Z, Yang, Y, Lin, Y, Gao, L, Zhou, J, Zhao, J, Li, F, Shi, Y, Huang, F, Yang, X, Peng, Y, Tu, L, Zhang, H, Zheng, H, He, J, Zhang, H, Xu, L, Huang, Q, Zhu, Y, Deng, K, Ye, L.Show

Signal Transduct Target Ther 7 114 ? (2022)

DOI: 10.1038/s41392-022-00954-8

Primary Citation of related structures