7EMN image
Deposition Date 2021-04-14
Release Date 2021-05-05
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7EMN
Keywords:
Title:
The atomic structure of SHP2 E76A mutant
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tyrosine-protein phosphatase non-receptor type 11
Gene (Uniprot):PTPN11
Mutations:E76A
Chain IDs:A, B
Chain Length:534
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
A novel partially open state of SHP2 points to a "multiple gear" regulation mechanism.
J.Biol.Chem. 296 100538 100538 (2021)
PMID: 33722610 DOI: 10.1016/j.jbc.2021.100538

Abstact

The protein tyrosine phosphatase SHP2 mediates multiple signal transductions in various cellular pathways, controlled by a variety of upstream inputs. SHP2 dysregulation is causative of different types of cancers and developmental disorders, making it a promising drug target. However, how SHP2 is modulated by its different regulators remains largely unknown. Here, we use single-molecule fluorescence resonance energy transfer and molecular dynamics simulations to investigate this question. We identify a partially open, semiactive conformation of SHP2 that is intermediate between the known open and closed states. We further demonstrate a "multiple gear" regulatory mechanism, in which different activators (e.g., insulin receptor substrate-1 and CagA), oncogenic mutations (e.g., E76A), and allosteric inhibitors (e.g., SHP099) can shift the equilibrium of the three conformational states and regulate SHP2 activity to different levels. Our work reveals the essential role of the intermediate state in fine-tuning the activity of SHP2, which may provide new opportunities for drug development for relevant cancers.

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