7EMK image
Deposition Date 2021-04-14
Release Date 2021-05-19
Last Version Date 2024-05-29
Entry Detail
PDB ID:
7EMK
Title:
Dendrorhynchus zhejiangensis ferritin
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
I 4 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Dendrorhynchus zhejiangensis ferritin
Chain IDs:A
Chain Length:169
Number of Molecules:1
Biological Source:Dendrorhynchus sinensis
Primary Citation
Structure determination of ferritin from Dendrorhynchus zhejiangensis
Biochemical and Biophysical Research Communications 531 195 202 (2020)
PMID: 32792196 DOI: 10.1016/j.bbrc.2020.07.069

Abstact

Ferritin is an important hub of iron metabolism because it stores iron during times of iron overload and releases iron during iron deficiency. Here, we present the first crystal structure of ferritin from the marine invertebrate Dendrorhynchus zhejiangensis with a 2.3 Å resolution. D. zhejiangensis ferritin (DzFer) exhibits a common cage-shaped hollow sphere with 24 subunits containing the ferroxidase centers and 3-fold and 4-fold channels. The structure of DzFer shows highly conserved catalytic residues in the ferroxidase center. The metal wire formed by ferrous ions in the 3-fold channel reveals the path that iron ions use to enter and translocate into the ferroxidase site to be oxidized and finally arrive at the nucleation site. However, the electrostatic environment of the channels and pores exhibits significant and extensive variability, suggesting that ferritins execute diverse functions in different environments.

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