7EKC image
Entry Detail
PDB ID:
7EKC
Title:
Structure of SARS-CoV-2 Gamma variant spike receptor-binding domain complexed with human ACE2
Biological Source:
PDB Version:
Deposition Date:
2021-04-05
Release Date:
2021-11-03
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.22
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Angiotensin-converting enzyme 2
Chain IDs:A
Chain Length:603
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Spike protein S1
Mutations:K417T, E484K, N501Y
Chain IDs:B
Chain Length:229
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Primary Citation
Molecular insights into receptor binding of recent emerging SARS-CoV-2 variants.
Nat Commun 12 6103 6103 (2021)
PMID: 34671049 DOI: 10.1038/s41467-021-26401-w

Abstact

Multiple SARS-CoV-2 variants of concern (VOCs) have been emerging and some have been linked to an increase in case numbers globally. However, there is yet a lack of understanding of the molecular basis for the interactions between the human ACE2 (hACE2) receptor and these VOCs. Here we examined several VOCs including Alpha, Beta, and Gamma, and demonstrate that five variants receptor-binding domain (RBD) increased binding affinity for hACE2, and four variants pseudoviruses increased entry into susceptible cells. Crystal structures of hACE2-RBD complexes help identify the key residues facilitating changes in hACE2 binding affinity. Additionally, soluble hACE2 protein efficiently prevent most of the variants pseudoviruses. Our findings provide important molecular information and may help the development of novel therapeutic and prophylactic agents targeting these emerging mutants.

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