7EJM image
Deposition Date 2021-04-02
Release Date 2022-01-26
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7EJM
Keywords:
Title:
Complex Structure of HLA-A*2402 with the Peptide from HCoV(CoV-229E) spike protein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.71 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:MHC class I antigen
Chain IDs:A
Chain Length:281
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B
Chain Length:106
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:9-mer peptide from the HCoV spike protein
Chain IDs:C
Chain Length:9
Number of Molecules:1
Biological Source:Human coronavirus 229E
Primary Citation
Identification of TCR repertoires in functionally competent cytotoxic T cells cross-reactive to SARS-CoV-2.
Commun Biol 4 1365 1365 (2021)
PMID: 34857854 DOI: 10.1038/s42003-021-02885-6

Abstact

SARS-CoV-2-specific CD8+ T cells are scarce but detectable in unexposed healthy donors (UHDs). It remains unclear whether pre-existing human coronavirus (HCoV)-specific CD8+ T cells are converted to functionally competent T cells cross-reactive to SARS-CoV-2. Here, we identified the HLA-A24-high binding, immunodominant epitopes in SARS-CoV-2 spike region that can be recognized by seasonal coronavirus-specific CD8+ T cells from HLA-A24+ UHDs. Cross-reactive CD8+ T cells were clearly reduced in patients with hematological malignancy, who are usually immunosuppressed, compared to those in UHDs. Furthermore, we showed that CD8+ T cells in response to a selected dominant epitope display multifunctionality and cross-functionality across HCoVs in HLA-A24+ donors. Cross-reactivity of T-cell receptors isolated from them exhibited selective diversity at the single-cell level. Taken together, when stimulated well by immunodominant epitopes, selective pre-existing CD8+ T cells with high functional avidity may be cross-reactive against SARS-CoV-2.

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