ISDA

Deposition Date 2021-03-24

Release Date 2022-01-12

Last Version Date 2022-01-12

Entry Detail

PDB ID:

7EGP

Keywords:

DNA BINDING PROTEIN

Title:

The structure of SWI/SNF-nucleosome complex

Biological Source:

Source Organism:

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Taxon ID: 559292)
Xenopus laevis (Taxon ID: 8355)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli-Pichia pastoris shuttle vector pPpARG4

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

6.90 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Transcription regulatory protein SNF2
Gene (Uniprot):SNF2
Chain IDs:H (auth: A)
Chain Length:982
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt ID:P22082 Pfam ID:PF00176, PF00271, PF14619

Protein Blast

Polymer Type:polypeptide(L)
Molecule:SWI/SNF chromatin-remodeling complex subunit SWI1
Gene (Uniprot):SWI1
Chain IDs:A (auth: B)
Chain Length:1093
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt ID:P09547 Pfam ID:PF01388

Protein Blast

Polymer Type:polypeptide(L)
Molecule:SWI/SNF chromatin-remodeling complex subunit SNF5
Gene (Uniprot):SNF5
Chain IDs:B (auth: C)
Chain Length:918
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt ID:P18480 Pfam ID:PF04855

Protein Blast

Polymer Type:polypeptide(L)
Molecule:SWI/SNF complex subunit SWI3
Gene (Uniprot):SWI3
Chain IDs:C (auth: D), G (auth: E)
Chain Length:836
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt ID:P32591 Pfam ID:PF04433, PF00249, PF16495

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Transcription regulatory protein SNF12
Gene (Uniprot):SNF12
Chain IDs:D (auth: H)
Chain Length:566
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt ID:P53628

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Transcription regulatory protein SNF6
Gene (Uniprot):SNF6
Chain IDs:E (auth: I)
Chain Length:332
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt ID:P18888

Protein Blast

Polymer Type:polypeptide(L)
Molecule:SWI/SNF global transcription activator complex subunit SWP82
Gene (Uniprot):SWP82
Chain IDs:F (auth: J)
Chain Length:634
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt ID:P43554 Pfam ID:PF08624

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Regulator of Ty1 transposition protein 102
Gene (Uniprot):RTT102
Chain IDs:I (auth: L)
Chain Length:157
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt ID:P53330 Pfam ID:PF09510

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Actin-related protein 7
Gene (Uniprot):ARP7
Chain IDs:J (auth: M)
Chain Length:477
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt ID:Q12406 Pfam ID:PF00022

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Actin-like protein ARP9
Gene (Uniprot):ARP9
Chain IDs:K (auth: N)
Chain Length:467
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

UniProt ID:Q05123 Pfam ID:PF00022

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Chain IDs:L (auth: O), P (auth: S)
Chain Length:135
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P84233 Pfam ID:PF00125

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:M (auth: P), Q (auth: T)
Chain Length:102
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P62799 Pfam ID:PF15511

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A
Gene (Uniprot):LOC494591
Chain IDs:N (auth: Q), R (auth: U)
Chain Length:129
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:Q6AZJ8 Pfam ID:PF00125, PF16211

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B 1.1
Chain IDs:O (auth: R), S (auth: V)
Chain Length:122
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P02281 Pfam ID:PF00125

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (239-MER)
Chain IDs:T (auth: W)
Chain Length:235
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (239-MER)
Chain IDs:U (auth: X)
Chain Length:235
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules