7EGB image
Deposition Date 2021-03-24
Release Date 2021-05-05
Last Version Date 2024-11-20
Entry Detail
PDB ID:
7EGB
Keywords:
TRANSCRIPTION
Title:
TFIID-based holo PIC on SCP promoter
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Sus scrofa (Taxon ID: 9823)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
7EGB validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CDK-activating kinase assembly factor MAT1
Gene (Uniprot):MNAT1
Chain IDs:A (auth: 0)
Chain Length:309
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P51948 Pfam ID:PF06391, PF17121
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription factor IIH subunit 1
Gene (Uniprot):GTF2H1
Chain IDs:B (auth: 1)
Chain Length:548
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P32780 Pfam ID:PF03909, PF08567
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription factor IIH subunit 2
Gene (Uniprot):GTF2H2
Chain IDs:C (auth: 2)
Chain Length:395
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q13888 Pfam ID:PF07975, PF04056
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription factor IIH subunit 3
Gene (Uniprot):GTF2H3
Chain IDs:D (auth: 3)
Chain Length:308
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q13889 Pfam ID:PF03850
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription factor IIH subunit 4
Gene (Uniprot):GTF2H4
Chain IDs:E (auth: 4)
Chain Length:462
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q92759 Pfam ID:PF03849, PF18307
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription factor IIH subunit 5
Gene (Uniprot):GTF2H5
Chain IDs:F (auth: 5)
Chain Length:71
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q6ZYL4 Pfam ID:PF06331
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription and DNA repair factor IIH helicase subunit XPB
Gene (Uniprot):ERCC3
Chain IDs:G (auth: 6)
Chain Length:782
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P19447 Pfam ID:PF13625, PF04851, PF16203
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription and DNA repair factor IIH helicase subunit XPD
Gene (Uniprot):ERCC2
Chain IDs:H (auth: 7)
Chain Length:760
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P18074 Pfam ID:PF06733, PF06777, PF13307 EC:3.6.4.12
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cyclin-dependent kinase 7
Gene (Uniprot):CDK7
Chain IDs:I (auth: 8)
Chain Length:346
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P50613 Pfam ID:PF00069 EC:2.7.11.22
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cyclin-H
Gene (Uniprot):CCNH
Chain IDs:J (auth: 9)
Chain Length:323
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P51946 Pfam ID:PF00134, PF16899
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor TFIID subunit 1
Gene (Uniprot):TAF1
Chain IDs:K (auth: A)
Chain Length:1872
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P21675 Pfam ID:PF09247, PF12157, PF15288, PF00439 EC:2.3.1.48
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor TFIID subunit 2
Gene (Uniprot):TAF2
Chain IDs:L (auth: B)
Chain Length:1199
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q6P1X5
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor TFIID subunit 4
Gene (Uniprot):TAF4
Chain IDs:M (auth: D), FA (auth: d)
Chain Length:1085
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:O00268 Pfam ID:PF07531, PF05236
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor TFIID subunit 5
Gene (Uniprot):TAF5
Chain IDs:N (auth: E), GA (auth: e)
Chain Length:800
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q15542 Pfam ID:PF04494, PF00400
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor TFIID subunit 6
Gene (Uniprot):TAF6
Chain IDs:O (auth: F), HA (auth: f)
Chain Length:677
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P49848 Pfam ID:PF02969, PF07571
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor TFIID subunit 7
Gene (Uniprot):TAF7
Chain IDs:P (auth: G)
Chain Length:349
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q15545 Pfam ID:PF04658
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor TFIID subunit 8
Gene (Uniprot):TAF8
Chain IDs:Q (auth: H)
Chain Length:310
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q7Z7C8 Pfam ID:PF07524, PF10406
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor TFIID subunit 9
Gene (Uniprot):TAF9
Chain IDs:R (auth: I), IA (auth: i)
Chain Length:264
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q16594 Pfam ID:PF02291
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor TFIID subunit 10
Gene (Uniprot):TAF10
Chain IDs:S (auth: J), JA (auth: j)
Chain Length:218
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q12962 Pfam ID:PF03540
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor TFIID subunit 12
Gene (Uniprot):TAF12
Chain IDs:T (auth: L), LA (auth: l)
Chain Length:161
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q16514 Pfam ID:PF03847
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor IIA subunit 2
Gene (Uniprot):GTF2A2
Chain IDs:U (auth: O)
Chain Length:109
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P52657 Pfam ID:PF02268, PF02751
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TATA-box-binding protein
Gene (Uniprot):TBP
Chain IDs:V (auth: P)
Chain Length:339
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P20226 Pfam ID:PF00352
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor IIA subunit 1
Gene (Uniprot):GTF2A1
Chain IDs:W (auth: Q)
Chain Length:376
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P52655 Pfam ID:PF03153
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor IIB
Gene (Uniprot):GTF2B
Chain IDs:X (auth: R)
Chain Length:142
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q00403 Pfam ID:PF08271, PF00382
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription factor IIF subunit 1
Gene (Uniprot):GTF2F1
Chain IDs:Y (auth: S)
Chain Length:210
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P35269 Pfam ID:PF05793
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription factor IIF subunit 2
Gene (Uniprot):GTF2F2
Chain IDs:Z (auth: T)
Chain Length:249
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P13984 Pfam ID:PF02270, PF17683
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription factor IIE subunit 1
Gene (Uniprot):GTF2E1
Chain IDs:AA (auth: U)
Chain Length:439
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P29083 Pfam ID:PF02002, PF08271, PF11521
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor IIE subunit beta
Gene (Uniprot):GTF2E2
Chain IDs:BA (auth: V)
Chain Length:150
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P29084 Pfam ID:PF02186, PF18121
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (69-MER)
Chain IDs:CA (auth: X)
Chain Length:67
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (69-MER)
Chain IDs:DA (auth: Y)
Chain Length:117
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor TFIID subunit 3
Gene (Uniprot):TAF3
Chain IDs:EA (auth: c)
Chain Length:929
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q5VWG9 Pfam ID:PF07524, PF00628
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor TFIID subunit 11
Gene (Uniprot):TAF11
Chain IDs:KA (auth: k)
Chain Length:211
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q15544 Pfam ID:PF04719
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor TFIID subunit 13
Gene (Uniprot):TAF13
Chain IDs:MA (auth: m)
Chain Length:124
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q15543 Pfam ID:PF02269
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB1
Gene (Uniprot):POLR2A
Chain IDs:NA (auth: o)
Chain Length:109
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P24928 Pfam ID:PF05001, PF04997, PF00623, PF04983, PF05000, PF04998, PF04992, PF04990
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit beta
Chain IDs:OA (auth: p)
Chain Length:339
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1TVZ5 Pfam ID:PF04563, PF04561, PF04565, PF04566, PF04567, PF00562, PF04560
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB3
Gene (Uniprot):POLR2C
Chain IDs:PA (auth: q)
Chain Length:376
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:I3LCH3 Pfam ID:PF01193, PF01000
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB4
Chain IDs:QA (auth: r)
Chain Length:142
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A481BYI6 Pfam ID:PF03874
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit E
Gene (Uniprot):POLR2E
Chain IDs:RA (auth: s)
Chain Length:210
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VTX4 Pfam ID:PF03871, PF01191
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit F
Gene (Uniprot):POLR2F
Chain IDs:SA (auth: t)
Chain Length:249
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VEK9 Pfam ID:PF01192
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB7
Gene (Uniprot):POLR2G
Chain IDs:TA (auth: u)
Chain Length:439
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VKG7 Pfam ID:PF03876, PF00575
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC3
Chain IDs:UA (auth: v)
Chain Length:150
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:I3LCB2 Pfam ID:PF03870
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB9
Gene (Uniprot):POLR2I
Chain IDs:VA (auth: w)
Chain Length:125
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:P60899 Pfam ID:PF02150, PF01096
Polymer Type:polypeptide(L)
Molecule:RPB10
Chain IDs:WA (auth: x)
Chain Length:67
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA_pol_L_2 domain-containing protein
Chain IDs:XA (auth: y)
Chain Length:117
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1RKE4 Pfam ID:PF13656
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RPB12
Gene (Uniprot):POLR2K
Chain IDs:YA (auth: z)
Chain Length:58
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1TRS6 Pfam ID:PF03604
Ligand Molecules
MG
SF4
ZN
Primary Citation
Structural insights into preinitiation complex assembly on core promoters.
Science 372 ? ? (2021)
PMID: 33795473 DOI: 10.1126/science.aba8490

Abstact

Transcription factor IID (TFIID) recognizes core promoters and supports preinitiation complex (PIC) assembly for RNA polymerase II (Pol II)-mediated eukaryotic transcription. We determined the structures of human TFIID-based PIC in three stepwise assembly states and revealed two-track PIC assembly: stepwise promoter deposition to Pol II and extensive modular reorganization on track I (on TATA-TFIID-binding element promoters) versus direct promoter deposition on track II (on TATA-only and TATA-less promoters). The two tracks converge at an ~50-subunit holo PIC in identical conformation, whereby TFIID stabilizes PIC organization and supports loading of cyclin-dependent kinase (CDK)-activating kinase (CAK) onto Pol II and CAK-mediated phosphorylation of the Pol II carboxyl-terminal domain. Unexpectedly, TBP of TFIID similarly bends TATA box and TATA-less promoters in PIC. Our study provides structural visualization of stepwise PIC assembly on highly diversified promoters.

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Protein

Chemical

Disease

Primary Citation of related structures
7EGB