7EEF image
Deposition Date 2021-03-18
Release Date 2021-07-07
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7EEF
Title:
Crystal structure of EphA7 mutant G656E
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.27
R-Value Work:
0.24
Space Group:
P 65
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ephrin type-A receptor 7
Gene (Uniprot):EPHA7
Mutations:G656E
Chain IDs:A
Chain Length:304
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Crystal structure of clinically reported mutations Gly656Arg, Gly656Glu and Asp751His identified in the kinase domain of EphA7.
Biochem.Biophys.Res.Commun. 568 62 67 (2021)
PMID: 34186436 DOI: 10.1016/j.bbrc.2021.06.048

Abstact

Erythropoietin producing hepatocellular (Eph) forms the largest family of receptor tyrosine kinases (RTK). As a family, Eph regulates physiological events such as cell-cell interaction, cell migration, and adhesion. The Kinase domain is the catalytic core of the Eph receptor and is highly conserved sequentially. EphA7 has been recently regarded as a cancer driver gene and comprises several clinically important mutations. Three of the EphA7 mutations Gly656Glu, Gly656Arg, and Asp751His, present in the kinase domain, are predicted to be highly pathogenic. Furthermore, Gly656Glu and Gly656Arg are reported to be hotspot mutations. Considering the importance of mutations, crystals structure of EphA7 Gly656Glu, Gly656Arg, and Asp751His mutants has been explored. Changes in folding pattern and intramolecular interactions were observed in mutant structures. Secondary structural changes were observed in the hinge region of EphA7 Gly656Arg and Asp751His structure, affecting the transition of kinase domain between open and closed conformations. EphA7 Asp751His mutant structure shows a distorted nucleotide-binding groove. Differences were observed in hydrogen bonding and hydrophobic interactions between the catalytic and highly conserved DFG motif in the EphA7 mutants, which may influence the catalytic activity of kinase domain.

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