7EAN image
Deposition Date 2021-03-07
Release Date 2021-03-31
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7EAN
Keywords:
Title:
immune complex of SARS-CoV-2 RBD and cross-neutralizing antibody 6D6
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.91 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:A
Chain Length:223
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Molecule:Heavy chain of SARS-CoV-2 cross-neutralizing mAb 6D6
Chain IDs:B (auth: H)
Chain Length:222
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Light chain of SARS-CoV-2 cross-neutralizing mAb 6D6
Chain IDs:C (auth: L)
Chain Length:210
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Cross-neutralizing antibodies bind a SARS-CoV-2 cryptic site and resist circulating variants.
Nat Commun 12 5652 5652 (2021)
PMID: 34580306 DOI: 10.1038/s41467-021-25997-3

Abstact

The emergence of numerous variants of SARS-CoV-2, the causative agent of COVID-19, has presented new challenges to the global efforts to control the COVID-19 pandemic. Here, we obtain two cross-neutralizing antibodies (7D6 and 6D6) that target Sarbecoviruses' receptor-binding domain (RBD) with sub-picomolar affinities and potently neutralize authentic SARS-CoV-2. Crystal structures show that both antibodies bind a cryptic site different from that recognized by existing antibodies and highly conserved across Sarbecovirus isolates. Binding of these two antibodies to the RBD clashes with the adjacent N-terminal domain and disrupts the viral spike. Both antibodies confer good resistance to mutations in the currently circulating SARS-CoV-2 variants. Thus, our results have direct relevance to public health as options for passive antibody therapeutics and even active prophylactics. They can also inform the design of pan-sarbecovirus vaccines.

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Protein

Chemical

Disease

Primary Citation of related structures
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