7E6G image
Deposition Date 2021-02-22
Release Date 2021-09-22
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7E6G
Keywords:
Title:
Crystal structure of diguanylate cyclase SiaD in complex with its activator SiaC from Pseudomonas aeruginosa
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Putative GGDEF domain protein
Gene (Uniprot):pleD_6
Chain IDs:A, B
Chain Length:276
Number of Molecules:2
Biological Source:Pseudomonas aeruginosa
Polymer Type:polypeptide(L)
Molecule:DUF1987 domain-containing protein
Gene (Uniprot):siaC
Chain IDs:C, D, E, F
Chain Length:127
Number of Molecules:4
Biological Source:Pseudomonas aeruginosa
Primary Citation
Structural basis for diguanylate cyclase activation by its binding partner in Pseudomonas aeruginosa .
Elife 10 ? ? (2021)
PMID: 34498587 DOI: 10.7554/eLife.67289

Abstact

Cyclic-di-guanosine monophosphate (c-di-GMP) is an important effector associated with acute-chronic infection transition in Pseudomonas aeruginosa. Previously, we reported a signaling network SiaABCD, which regulates biofilm formation by modulating c-di-GMP level. However, the mechanism for SiaD activation by SiaC remains elusive. Here we determine the crystal structure of SiaC-SiaD-GpCpp complex and revealed a unique mirror symmetric conformation: two SiaD form a dimer with long stalk domains, while four SiaC bind to the conserved motifs on the stalks of SiaD and stabilize the conformation for further enzymatic catalysis. Furthermore, SiaD alone exhibits an inactive pentamer conformation in solution, demonstrating that SiaC activates SiaD through a dynamic mechanism of promoting the formation of active SiaD dimers. Mutagenesis assay confirmed that the stalks of SiaD are necessary for its activation. Together, we reveal a novel mechanism for DGC activation, which clarifies the regulatory networks of c-di-GMP signaling.

Legend

Protein

Chemical

Disease

Primary Citation of related structures