7E5B image
Deposition Date 2021-02-18
Release Date 2022-03-02
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7E5B
Keywords:
Title:
Crystal structure of ASC PYD Domain and Rb-B7
Biological Source:
Source Organism:
Cyclostomata (Taxon ID: 1476529)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.29 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Repebody (Rb-B7)
Chain IDs:A, B
Chain Length:266
Number of Molecules:2
Biological Source:Cyclostomata
Polymer Type:polypeptide(L)
Molecule:Apoptosis-associated speck-like protein containing a CARD
Gene (Uniprot):PYCARD
Chain IDs:C, D
Chain Length:92
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Oligomeric states of ASC specks regulate inflammatory responses by inflammasome in the extracellular space.
Cell Death Discov 9 142 142 (2023)
PMID: 37120628 DOI: 10.1038/s41420-023-01438-6

Abstact

Inflammasomes are multi-protein complexes and play a crucial role in host defense against pathogens. Downstream inflammatory responses through inflammasomes are known to be related to the oligomerization degree of ASC specks, but the detailed mechanism still remains unexplored. Here, we demonstrate that oligomerization degrees of ASC specks regulate the caspase-1 activation in the extracellular space. A protein binder specific for a pyrin domain (PYD) of ASC (ASCPYD) was developed, and structural analysis revealed that the protein binder effectively inhibits the interaction between PYDs, disassembling ASC specks into low oligomeric states. ASC specks with a low oligomerization degree were shown to enhance the activation of caspase-1 by recruiting and processing more premature caspase-1 through interactions between CARD of caspase-1 (caspase-1CARD) and CARD of ASC (ASCCARD). These findings can provide insight into controlling the inflammasome-mediated inflammatory process as well as the development of inflammasome-targeting drugs.

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Primary Citation of related structures